Miyakogusa Predicted Gene

Lj4g3v0340800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340800.1 Non Characterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,46.56,4e-19,Ribosomal_L32p,Ribosomal protein L32p; Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding,CUFF.46998.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g025320.2 | ribosomal protein L32 | HC | chr1:8082271-8076...   158   1e-39
Medtr1g025320.1 | ribosomal protein L32 | HC | chr1:8082271-8076...   158   1e-39
Medtr1g025320.3 | ribosomal protein L32 | HC | chr1:8082271-8076...   158   1e-39
Medtr1g025320.4 | ribosomal protein L32 | HC | chr1:8082271-8076...   150   2e-37
Medtr1g025320.5 | ribosomal protein L32 | HC | chr1:8082271-8076...   150   2e-37

>Medtr1g025320.2 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 92/126 (73%), Gaps = 6/126 (4%)

Query: 7   MATKFAILRGNGRSL---LGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSFG 60
           M  + AILR   R L   LGFNRL HSVP   PLAGSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 61  DSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 120
            SMELMAVP            NGPKALKP+PVLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 121 EQNGRN 126
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.1 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 92/126 (73%), Gaps = 6/126 (4%)

Query: 7   MATKFAILRGNGRSL---LGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSFG 60
           M  + AILR   R L   LGFNRL HSVP   PLAGSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 61  DSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 120
            SMELMAVP            NGPKALKP+PVLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 121 EQNGRN 126
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.3 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 126

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 92/126 (73%), Gaps = 6/126 (4%)

Query: 7   MATKFAILRGNGRSL---LGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSFG 60
           M  + AILR   R L   LGFNRL HSVP   PLAGSID G+ S +PVLPEF SP+FSFG
Sbjct: 1   MTMRIAILRDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPTFSFG 60

Query: 61  DSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 120
            SMELMAVP            NGPKALKP+PVLVLCKGCGRVRLPH+YCCSGKPN ++TG
Sbjct: 61  GSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQENTG 120

Query: 121 EQNGRN 126
            +NG N
Sbjct: 121 GENGTN 126


>Medtr1g025320.4 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 137

 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 6/130 (4%)

Query: 3   ITAGMATKFAILRGNGRSL---LGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPS 56
           I         I+    R L   LGFNRL HSVP   PLAGSID G+ S +PVLPEF SP+
Sbjct: 8   IVYSYHASLCIIWDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPT 67

Query: 57  FSFGDSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNH 116
           FSFG SMELMAVP            NGPKALKP+PVLVLCKGCGRVRLPH+YCCSGKPN 
Sbjct: 68  FSFGGSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQ 127

Query: 117 DHTGEQNGRN 126
           ++TG +NG N
Sbjct: 128 ENTGGENGTN 137


>Medtr1g025320.5 | ribosomal protein L32 | HC | chr1:8082271-8076738
           | 20130731
          Length = 137

 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 6/130 (4%)

Query: 3   ITAGMATKFAILRGNGRSL---LGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPS 56
           I         I+    R L   LGFNRL HSVP   PLAGSID G+ S +PVLPEF SP+
Sbjct: 8   IVYSYHASLCIIWDTRRKLGGALGFNRLIHSVPQSPPLAGSIDHGIQSLKPVLPEFCSPT 67

Query: 57  FSFGDSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNH 116
           FSFG SMELMAVP            NGPKALKP+PVLVLCKGCGRVRLPH+YCCSGKPN 
Sbjct: 68  FSFGGSMELMAVPKRKTSPHKRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKPNQ 127

Query: 117 DHTGEQNGRN 126
           ++TG +NG N
Sbjct: 128 ENTGGENGTN 137