Miyakogusa Predicted Gene

Lj4g3v0340770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340770.1 Non Characterized Hit- tr|B9SWA2|B9SWA2_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.65,0.0000000000008,seg,NULL,CUFF.46995.1
         (240 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094252.1 | plant/MHJ24-14 protein | HC | chr4:37546194-37...   292   2e-79

>Medtr4g094252.1 | plant/MHJ24-14 protein | HC |
           chr4:37546194-37541835 | 20130731
          Length = 242

 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/247 (62%), Positives = 174/247 (70%), Gaps = 12/247 (4%)

Query: 1   MSLSLLQSYSS-DEDEHHQPYISNS--DEDHDGD---GEPSTAAHPSLADRSIFDHXXXX 54
           MSLSL+Q YSS +E+E  QP+I NS  D+  D D    EPS A+HPSL DRSIFDH    
Sbjct: 1   MSLSLIQGYSSAEEEEEDQPHIHNSVSDDQDDADYNSAEPSAASHPSLGDRSIFDHHPPP 60

Query: 55  XXXXXX-XXFDAFSEVSGPPQFLNNSVEEYNPVXXXXXXXXXXXXXXXXXKVKKDLPSGA 113
                    FDAFSE+ GPPQFLN+S  E+NP                  K K+DLP+GA
Sbjct: 61  PSASGLPSAFDAFSEIPGPPQFLNHSTGEFNP-----PQNDHQRSSRRHRKEKRDLPTGA 115

Query: 114 VLEAKPQLVGIHERVRSDINGSQPPXXXXXXXXXXXKRVPSVTNPTPEDAADLLRMCLQC 173
           V+EAK QLVGIHERVRSDING QPP           KRVP+ TNP  EDAA+LLRMC+QC
Sbjct: 116 VVEAKAQLVGIHERVRSDINGGQPPTPATVSTSETGKRVPTATNPNAEDAAELLRMCVQC 175

Query: 174 GIPKTFSNARGMVCPVCGDRPPKDPSTETKNKGSTIKDKEKSKRMKGQSSHASWKSETEM 233
           GIPKT+S+ARGMVCPVCGDRPP +PS E K KGST+KDKEKSKRM+GQSSHASWKSETEM
Sbjct: 176 GIPKTYSSARGMVCPVCGDRPPPEPSAEAKKKGSTVKDKEKSKRMRGQSSHASWKSETEM 235

Query: 234 HLRQQFD 240
            LRQ FD
Sbjct: 236 QLRQHFD 242