Miyakogusa Predicted Gene
- Lj4g3v0340710.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0340710.1 Non Characterized Hit- tr|J3LSA8|J3LSA8_ORYBR
Uncharacterized protein (Fragment) OS=Oryza
brachyanth,50.75,0.000000000008,seg,NULL; Hyccin,Hyccin,CUFF.46958.1
(410 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g094262.1 | hyccin protein | HC | chr4:37571961-37569966 |... 388 e-108
Medtr5g087660.1 | hyccin protein | HC | chr5:38006198-38005140 |... 177 2e-44
Medtr3g465420.1 | hyccin protein | HC | chr3:26461615-26462667 |... 171 1e-42
>Medtr4g094262.1 | hyccin protein | HC | chr4:37571961-37569966 |
20130731
Length = 426
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 235/391 (60%), Gaps = 18/391 (4%)
Query: 28 KTDDPMHSWWESVSKARSRIHSLATILPNXXXXXXXXXXXXERPXXXXXXXXXXXXXXXX 87
T+DPMHSWWESVSKARSRIHSL++ILP ERP
Sbjct: 46 NTNDPMHSWWESVSKARSRIHSLSSILPTHTSTLSPLADS-ERPALSLLSSPTAYSALSS 104
Query: 88 XXXXXXXDPLCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 147
DPLCHWLYDTFLSSDP +
Sbjct: 105 SLSGSHSDPLCHWLYDTFLSSDPHLRLVVLSFIPLLSGLYLSRLHSSDPPSL-------A 157
Query: 148 GFEAVLLALYAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNSNANAPSSVAVISPPL 207
GFEAVLLALYA+ETKSR GKPL+ T+PDLS+PSIYHSPLRK + N N SV VISPPL
Sbjct: 158 GFEAVLLALYASETKSRAGKPLLVTIPDLSIPSIYHSPLRKSSSQNPNP--SVGVISPPL 215
Query: 208 EPLLAVKSTKRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGWAGQDCPCRRDLDRVPX 267
EP LAVKSTKRASIVG AL SYFSQISHMPSWSKLEF RF AGWAGQDCPCRR+ D++
Sbjct: 216 EPHLAVKSTKRASIVGVALHSYFSQISHMPSWSKLEFSRFAAGWAGQDCPCRREFDQIEN 275
Query: 268 XXXXXXXXXXXXXXXXXXXCDREIEIESVGEMMGKVQIHDS-------DGLAKGDRIPLP 320
+ E+EIE V E M ++IH G+AKGDRIPLP
Sbjct: 276 LNNTLALSNGNGNGYSNGDGESEVEIEEVAENMRNLEIHHDPECEESPKGIAKGDRIPLP 335
Query: 321 WEILQPALRILGHCLFAPLNPQEVKDAASFAVRCLYARASHDLVPQAILATRSLIQLXXX 380
WEILQP LRILGHCL PL QEVKDAASFAVRCLYARASHDLVPQAILATRSLIQL
Sbjct: 336 WEILQPTLRILGHCLMGPLISQEVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDNR 395
Query: 381 XXXXXXXXXXXXXXXXX-XXXKKPEILLVSK 410
KKPEILLVSK
Sbjct: 396 TRDAITSASAVASNVNTPTKAKKPEILLVSK 426
>Medtr5g087660.1 | hyccin protein | HC | chr5:38006198-38005140 |
20130731
Length = 352
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 144/282 (51%), Gaps = 30/282 (10%)
Query: 97 LCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFEAVLLAL 156
LC WLYDTF S+ +GFEAVLLAL
Sbjct: 78 LCRWLYDTFQSN---------VGDLQLTVLRFLPIIAGVYLSRVADRKPQAGFEAVLLAL 128
Query: 157 YAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNSNANAPSSVAVISPPLEPLLAVKST 216
YA ET SR G+ + T+PD+S PS+YH + N N ++ V+SP LEP V+ST
Sbjct: 129 YAHETNSRAGEAVTVTIPDMSHPSVYHE-FKAVVNKNGATDLNIVVLSPSLEPHGTVRST 187
Query: 217 KRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGWAGQDCPCRRDLDRVPXXXXXXXXXX 276
+RA IVG A + ++++IS MP K++FC+F WAG+D ++ +
Sbjct: 188 RRARIVGIAFELFYNKISQMPVAPKIDFCKFCKIWAGEDGDMYKNFEDEDEDEEEEEEEE 247
Query: 277 XXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGLAKGDRIPLPWEILQPALRILGHCLF 336
E+EI+ VGE + K R+P+PWE+LQP LRILGHCL
Sbjct: 248 N-----------NEVEIQKVGE--------GGEEFVKSGRVPMPWELLQPVLRILGHCLL 288
Query: 337 APLNPQEVK-DAASFAVRCLYARASHDLVPQAILATRSLIQL 377
P N + + AS A RCL+ARA HD+ P+AIL RSL++L
Sbjct: 289 GPNNRDTMLFENASEACRCLFARAMHDVNPKAILPMRSLLRL 330
>Medtr3g465420.1 | hyccin protein | HC | chr3:26461615-26462667 |
20130731
Length = 350
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 142/282 (50%), Gaps = 32/282 (11%)
Query: 97 LCHWLYDTFLSSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFEAVLLAL 156
LC WLYDTF S+ +GFEAVLLAL
Sbjct: 78 LCRWLYDTFQSN---------ITDLQLTVLRFLPIIAGVYLSRVADRKPQAGFEAVLLAL 128
Query: 157 YAAETKSRNGKPLIATVPDLSLPSIYHSPLRKPQNSNANAPSSVAVISPPLEPLLAVKST 216
YA ET SR G+ + T+PD++ PS+YH + N N+ ++ V+SP LEP V+ST
Sbjct: 129 YAHETTSRAGEAVTITIPDMTHPSVYHES-KVVNNKNSATDLNIVVLSPSLEPHGTVRST 187
Query: 217 KRASIVGAALQSYFSQISHMPSWSKLEFCRFLAGWAGQDCPCRRDLDRVPXXXXXXXXXX 276
+RA IVG A + ++S+IS MP K++FC F WAG+D ++ +
Sbjct: 188 RRARIVGIAFELFYSKISEMPVSPKIDFCNFCKIWAGEDGDMYKNFEDEDEDDEEEDEEE 247
Query: 277 XXXXXXXXXXCDREIEIESVGEMMGKVQIHDSDGLAKGDRIPLPWEILQPALRILGHCLF 336
E+EI+ GE K R+P+PWE+LQP LRILGHCL
Sbjct: 248 EN----------NEVEIDKEGE-----------EFVKTGRVPMPWELLQPVLRILGHCLL 286
Query: 337 APLNPQEVK-DAASFAVRCLYARASHDLVPQAILATRSLIQL 377
P N + + AS A RCL+ARA HD+ P+AIL RSL++L
Sbjct: 287 GPNNKDTMLFEKASEACRCLFARAMHDVNPKAILPMRSLLRL 328