Miyakogusa Predicted Gene

Lj4g3v0336950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0336950.1 Non Characterized Hit- tr|B8AEB3|B8AEB3_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,44.71,0.0000000000005,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; no description,Galactose oxidase,
beta-propeller,gene.g52069.t1.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g008440.1 | galactose oxidase/kelch repeat protein | HC | ...   276   7e-75
Medtr3g073640.1 | galactose oxidase/kelch repeat protein | HC | ...   212   1e-55
Medtr2g019230.1 | kelch repeat F-box protein | HC | chr2:6225091...    58   5e-09

>Medtr2g008440.1 | galactose oxidase/kelch repeat protein | HC |
           chr2:1477784-1476354 | 20130731
          Length = 476

 Score =  276 bits (706), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 152/185 (82%), Gaps = 7/185 (3%)

Query: 1   MSSYRGRLFVPQSLYCWPFFVDAGGEVYDPNVNSWLEMPIGMSEGWPARQAGTKLCVAVN 60
           M+SYRGRLFVPQSLYCWPFFVD GGEVYDP++NSWLEMP GM +GWPARQAGTKL V VN
Sbjct: 293 MTSYRGRLFVPQSLYCWPFFVDVGGEVYDPDINSWLEMPGGMGDGWPARQAGTKLSVTVN 352

Query: 61  DVLYALDPSDSLDSTAKIKVYDFEGDAWKVAAGDVPIHDSADLESPYLLAGLLGKLHVIT 120
           + LYALDPS SL+  AKIKVYD EGD WKV AGDVPIHD AD ESPYLLA LLGKLHVIT
Sbjct: 353 NDLYALDPSSSLN-YAKIKVYDEEGDTWKVVAGDVPIHDFADSESPYLLASLLGKLHVIT 411

Query: 121 TDGDHNIVVLQGDMQNGLAFSKF------SEDGESSAETEKEFWRVLATRSGRSAELVSC 174
            D +HNI VLQ +MQN LA S+       SE  ESSAE+E E W+V A+RSGRS+ELVSC
Sbjct: 412 KDANHNIAVLQANMQNELASSQSMLSSPDSERAESSAESETEIWKVFASRSGRSSELVSC 471

Query: 175 QTLEI 179
           Q+L++
Sbjct: 472 QSLKV 476


>Medtr3g073640.1 | galactose oxidase/kelch repeat protein | HC |
           chr3:33212096-33209398 | 20130731
          Length = 478

 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 134/190 (70%), Gaps = 12/190 (6%)

Query: 1   MSSYRGRLFVPQSLYCWPFFVDAGGEVYDPNVNSWLEMPIGMSEGWPARQAGTKLCVAVN 60
           +++Y GRL VPQSLY WPFFVD GGE+YDP  NSW+EMP+GM EGWPARQAGTKL V V+
Sbjct: 290 LTAYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPLGMGEGWPARQAGTKLSVVVD 349

Query: 61  DVLYALDPSDSLDSTAKIKVYDFEGDAWKVAAGDVPIHDSADLESPYLLAGLLGKLHVIT 120
             LYA DPS+++DS  +IKVYD   DAWKV  G VPI+ S D ESPYLLAG  GKLHVIT
Sbjct: 350 GELYAFDPSNTMDS-GRIKVYDQGEDAWKVVIGKVPIYGSDDSESPYLLAGFHGKLHVIT 408

Query: 121 TDGDHNIVVLQGDMQNGLAFSKFS-----------EDGESSAETEKEFWRVLATRSGRSA 169
            D DHNI VLQ ++++ L  S  S           E+ +  AET+   W+++A+R    A
Sbjct: 409 KDADHNIAVLQAELRSNLDSSPSSPSSTLSQSSLHENADPPAETDAVVWKIVASRCLGQA 468

Query: 170 ELVSCQTLEI 179
           ELVSCQ +++
Sbjct: 469 ELVSCQVIDM 478


>Medtr2g019230.1 | kelch repeat F-box protein | HC |
           chr2:6225091-6227537 | 20130731
          Length = 405

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 16/98 (16%)

Query: 1   MSSY-----RGRLFVPQSLYCWPFFVDAGGEVYDPNVNSWLEMPIGMSEGWPARQAGTKL 55
           M+SY      G+L V +  + WPF+V   G+VYDP  NSW  M +G+ EGW      T  
Sbjct: 244 MASYDAAVLNGKLLVTEG-WLWPFYVSPRGQVYDPRTNSWETMAVGLREGW------TGS 296

Query: 56  CVAVNDVLYALDPSDSLDSTAKIKVYDFEGDAWKVAAG 93
            V V   L+ +   + +    K+KVY+ E D+W+   G
Sbjct: 297 SVVVYGHLFVVSELERM----KLKVYNQEADSWEAIDG 330