Miyakogusa Predicted Gene

Lj4g3v0336790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0336790.1 Non Characterized Hit- tr|K4C472|K4C472_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,43.27,4e-19,no
description,Clathrin adaptor, phosphoinositide-binding, GAT-like;
seg,NULL; ANTH,ANTH; CLATHRIN A,CUFF.46905.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g008860.1 | clathrin assembly plant-like protein | HC | ch...   118   1e-27
Medtr2g008170.1 | clathrin assembly plant-like protein, putative...   110   2e-25
Medtr3g106900.2 | clathrin assembly plant-like protein, putative...    80   4e-16
Medtr3g106900.1 | clathrin assembly plant-like protein, putative...    80   4e-16
Medtr4g114960.1 | clathrin assembly plant-like protein, putative...    64   3e-11
Medtr3g080490.1 | clathrin assembly protein | LC | chr3:36416634...    55   1e-08

>Medtr8g008860.1 | clathrin assembly plant-like protein | HC |
           chr8:1923626-1926030 | 20130731
          Length = 588

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 67/100 (67%)

Query: 1   MEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIK 60
           MEVP+  KVYD+FCRVGKQYDEL+ FYSWSK+IGI RSSEYPEIE+VTTKKLD+MDQ+I+
Sbjct: 268 MEVPEYYKVYDVFCRVGKQYDELDLFYSWSKSIGIGRSSEYPEIEKVTTKKLDLMDQFIR 327

Query: 61  DKSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKALPAP 100
           DKS++                            IKALP P
Sbjct: 328 DKSLVSQANKLITQEENNEKNEEENEVEEDMNEIKALPPP 367


>Medtr2g008170.1 | clathrin assembly plant-like protein, putative |
           HC | chr2:1328318-1330353 | 20130731
          Length = 607

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 59/65 (90%)

Query: 1   MEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIK 60
           M+V DCIKVYDIFCR+GKQ+DEL+ FY WSK IGI RSSEYPEI++VT KKL+VM+++IK
Sbjct: 272 MDVADCIKVYDIFCRIGKQFDELDLFYGWSKNIGICRSSEYPEIDKVTPKKLEVMEEFIK 331

Query: 61  DKSML 65
           DK+ML
Sbjct: 332 DKNML 336


>Medtr3g106900.2 | clathrin assembly plant-like protein, putative |
           HC | chr3:49401713-49404604 | 20130731
          Length = 641

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 49/63 (77%)

Query: 1   MEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIK 60
           ME PDC+K +D +    KQ DEL +FY+W K  G+ARSSEYPE++R+T+K L+ ++++++
Sbjct: 295 MEYPDCVKAFDAYASAAKQIDELVAFYNWCKESGLARSSEYPEVQRITSKLLETLEEFVR 354

Query: 61  DKS 63
           D++
Sbjct: 355 DRA 357


>Medtr3g106900.1 | clathrin assembly plant-like protein, putative |
           HC | chr3:49401686-49404604 | 20130731
          Length = 641

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 49/63 (77%)

Query: 1   MEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIK 60
           ME PDC+K +D +    KQ DEL +FY+W K  G+ARSSEYPE++R+T+K L+ ++++++
Sbjct: 295 MEYPDCVKAFDAYASAAKQIDELVAFYNWCKESGLARSSEYPEVQRITSKLLETLEEFVR 354

Query: 61  DKS 63
           D++
Sbjct: 355 DRA 357


>Medtr4g114960.1 | clathrin assembly plant-like protein, putative |
           HC | chr4:47396184-47393729 | 20130731
          Length = 601

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 1   MEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIK 60
           ME   C++ ++ +    K  DEL  FY W K  GIARSSEYPE++++T   L  ++ ++K
Sbjct: 254 MEYAHCVQAFEFYVSASKMMDELAGFYGWCKDTGIARSSEYPEVQKITDSLLGTLEGFLK 313

Query: 61  DKS 63
           + S
Sbjct: 314 EMS 316


>Medtr3g080490.1 | clathrin assembly protein | LC |
           chr3:36416634-36413839 | 20130731
          Length = 931

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 39/58 (67%)

Query: 6   CIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERVTTKKLDVMDQYIKDKS 63
           C+  ++   +  KQ+DEL +FYS+   IGI RS EYP +++V+ + ++ +  ++KD++
Sbjct: 250 CVTAFNACVKSYKQFDELSAFYSFCLNIGIGRSYEYPSVQKVSEELMETLQAFLKDQA 307