Miyakogusa Predicted Gene

Lj4g3v0310500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0310500.1 Non Characterized Hit- tr|K4C232|K4C232_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,43.31,5e-18,DNA
POLYMERASE DELTA SUBUNIT 4,NULL; DNA_pol_delta_4,DNA polymerase delta,
subunit 4,CUFF.46817.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094465.1 | DNA polymerase delta subunit 4 | HC | chr4:380...   129   5e-31
Medtr4g094458.1 | DNA polymerase delta subunit 4 | HC | chr4:380...    89   6e-19
Medtr1g105865.1 | DNA polymerase delta subunit 4 | HC | chr1:477...    68   2e-12
Medtr5g006580.1 | DNA polymerase delta, subunit 4 | HC | chr5:99...    57   3e-09

>Medtr4g094465.1 | DNA polymerase delta subunit 4 | HC |
           chr4:38037816-38038698 | 20130731
          Length = 114

 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 80/109 (73%), Gaps = 5/109 (4%)

Query: 3   SVSGIYRQKKKNPAPT--KSSKK-QPPSRAATTAVPQTPALPDLQDESNGNEAVLRQFDL 59
           ++ G Y+QKK     T  KSSK  +PP+ A+T+  P     PDLQDE NG+EAVLRQFD+
Sbjct: 8   NMKGFYKQKKNTNLTTTAKSSKSIKPPTHASTS--PSLNTNPDLQDEHNGSEAVLRQFDM 65

Query: 60  NMAYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWNGCI 108
           NM YGPC+GM RLAR ERA KLGLNPP+EI  LLKSGKVQ ESLW+  I
Sbjct: 66  NMKYGPCMGMTRLARLERAVKLGLNPPEEIAELLKSGKVQQESLWDTRI 114


>Medtr4g094458.1 | DNA polymerase delta subunit 4 | HC |
           chr4:38029716-38030058 | 20130731
          Length = 95

 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 43  LQDESNGNEAVLRQFDLNMAYGPCIGMPRLARWERAQKLGLNPPQEI-ERLLKSGKVQAE 101
           + DE N +E+VLRQFDLNM YGP IG+ RL RWERA+K  +NPPQEI E +LKSG  Q E
Sbjct: 29  VTDEQNNSESVLRQFDLNMDYGPSIGLTRLERWERAKKWDMNPPQEIKELILKSGNDQQE 88

Query: 102 SLWN 105
            LWN
Sbjct: 89  GLWN 92


>Medtr1g105865.1 | DNA polymerase delta subunit 4 | HC |
           chr1:47797015-47797480 | 20130731
          Length = 103

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 46  ESNGNEAVLRQFDLNMAYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWN 105
           E +  E  LR+FD+N AYGPC+GM RL R+ERA+K GL PP +I  +LK+  V  E L +
Sbjct: 34  EYSKEEMTLREFDMNTAYGPCLGMTRLERYERARKWGLKPPPKIGMILKAFNVDKECLLH 93


>Medtr5g006580.1 | DNA polymerase delta, subunit 4 | HC |
           chr5:992799-991929 | 20130731
          Length = 171

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 59  LNMAYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWN 105
           ++  YGPC GM RL R+ERA K  LNPP EI + LK   V  E LW+
Sbjct: 1   MDTKYGPCFGMTRLERYERALKWNLNPPPEIGKFLKKCNVDEECLWH 47