Miyakogusa Predicted Gene

Lj4g3v0280790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0280790.1 tr|E4MW07|E4MW07_THEHA mRNA, clone: RTFL01-07-E01
OS=Thellungiella halophila PE=2 SV=1,48.08,2e-19,HMG_BOX_2,High
mobility group, superfamily; seg,NULL; high mobility group,High
mobility group, super,CUFF.46764.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094622.1 | high mobility group (HMG)-box protein | HC | c...   173   5e-44
Medtr7g068280.1 | high mobility group (HMG)-box protein | HC | c...    92   2e-19
Medtr3g115580.1 | high mobility group (HMG)-box protein | HC | c...    92   2e-19
Medtr1g115220.1 | high mobility group (HMG)-box protein | HC | c...    89   2e-18
Medtr8g073345.1 | high mobility group (HMG)-box protein | HC | c...    88   4e-18
Medtr8g073345.2 | high mobility group (HMG)-box protein | HC | c...    87   4e-18
Medtr7g082820.1 | high mobility group (HMG)-box protein | LC | c...    71   5e-13
Medtr5g024180.1 | high mobility group (HMG)-box protein | HC | c...    69   3e-12
Medtr1g022345.2 | FACT complex subunit SSRP1 | HC | chr1:7068528...    50   7e-07
Medtr1g022345.1 | FACT complex subunit SSRP1 | HC | chr1:7068528...    50   7e-07
Medtr8g099305.1 | high mobility group (HMG)-box protein | HC | c...    49   1e-06
Medtr8g018100.1 | HMG (high mobility group) box protein | LC | c...    49   2e-06

>Medtr4g094622.1 | high mobility group (HMG)-box protein | HC |
           chr4:38397399-38400649 | 20130731
          Length = 152

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 91/116 (78%)

Query: 30  KLVLRVKSSEQMKRXXXXXXXXXXXXXXXXXXXXRIDANKPKKPPTAFFYFLEDFRKEFQ 89
           KLVL +KS+E MKR                    +IDA KPKKPPTAFFYFLEDFRKEF+
Sbjct: 24  KLVLAIKSNEGMKRSLRQTKSRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFK 83

Query: 90  VQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKKMESG 145
            QNPDVK+MRDIGK+CGEKWKTMT+EEKVQYYDIATEKRAEFDRA TEYNKKMESG
Sbjct: 84  DQNPDVKSMRDIGKACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNKKMESG 139


>Medtr7g068280.1 | high mobility group (HMG)-box protein | HC |
           chr7:24961149-24964926 | 20130731
          Length = 170

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 55/76 (72%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D NKPK+PP+AFF FLEDFRK F+ +NP+VK +  +GK+ GEKWK++T  EK  Y   A 
Sbjct: 47  DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAA 106

Query: 126 EKRAEFDRAMTEYNKK 141
           +++ E+++ M  YN K
Sbjct: 107 KRKVEYEKLMNAYNNK 122


>Medtr3g115580.1 | high mobility group (HMG)-box protein | HC |
           chr3:54096577-54098910 | 20130731
          Length = 155

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 56/80 (70%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D NKPK+PP+AFF F+EDFRK+F+  NPD K +  +GK+ G KWK+++  EK  Y   A 
Sbjct: 41  DPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAE 100

Query: 126 EKRAEFDRAMTEYNKKMESG 145
           +++AE+++ M  YNKK   G
Sbjct: 101 KRKAEYEKTMKAYNKKQAEG 120


>Medtr1g115220.1 | high mobility group (HMG)-box protein | HC |
           chr1:51907197-51909052 | 20130731
          Length = 210

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D N PK+PPTAFF F+++FRK F+  NPD K ++ +GK  GEKW+++T EEK  Y D   
Sbjct: 98  DPNAPKRPPTAFFVFMDEFRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKKPYLDKVV 157

Query: 126 EKRAEFDRAMTEYNKK-MESGEFEDTDEE 153
           E +AE+D+AM  YN    ES + E +D+E
Sbjct: 158 ELKAEYDKAMELYNAATAESEDQEGSDKE 186


>Medtr8g073345.1 | high mobility group (HMG)-box protein | HC |
           chr8:31116213-31114408 | 20130731
          Length = 142

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 60/84 (71%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D NKPK+PP+AFF F+ DFR++++  +P+ K++  +GK+CGE WK+M+ E+K  Y   A 
Sbjct: 33  DPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARAL 92

Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
           +K+ E++ A   YNKK+E  + ED
Sbjct: 93  KKKEEYEVATQAYNKKLEGKDEED 116


>Medtr8g073345.2 | high mobility group (HMG)-box protein | HC |
           chr8:31116058-31114418 | 20130731
          Length = 133

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 60/84 (71%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D NKPK+PP+AFF F+ DFR++++  +P+ K++  +GK+CGE WK+M+ E+K  Y   A 
Sbjct: 33  DPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARAL 92

Query: 126 EKRAEFDRAMTEYNKKMESGEFED 149
           +K+ E++ A   YNKK+E  + ED
Sbjct: 93  KKKEEYEVATQAYNKKLEGKDEED 116


>Medtr7g082820.1 | high mobility group (HMG)-box protein | LC |
           chr7:31761715-31763114 | 20130731
          Length = 144

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D +KPK+P + FF F+ DFR  F+ +NPD K +  +GK+ GEKW++M+ ++K  Y   A 
Sbjct: 9   DPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMS-DDKAPYVADAE 67

Query: 126 EKRAEFDRAMTEYNKKM 142
           +K+ E+ +A+  YNKK+
Sbjct: 68  KKKMEYVKAIHAYNKKV 84


>Medtr5g024180.1 | high mobility group (HMG)-box protein | HC |
           chr5:9694636-9696231 | 20130731
          Length = 140

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 50/74 (67%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D NKPK+PP+AFF F+ +FR+ F+ +NP  K++  +GK+ G++WK ++  +K  +   A 
Sbjct: 32  DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPFIAKAD 91

Query: 126 EKRAEFDRAMTEYN 139
           + + E+++ M  YN
Sbjct: 92  KLKEEYEKTMRAYN 105


>Medtr1g022345.2 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D N PK+  + F +F +  R+  +  NP + +  D+G+  GEKWK ++ EEK  Y   A 
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612

Query: 126 EKRAEFDRAMTEYNKK 141
           E +  +   M+ YNK 
Sbjct: 613 EDKKRYKDEMSGYNKN 628


>Medtr1g022345.1 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D N PK+  + F +F +  R+  +  NP + +  D+G+  GEKWK ++ EEK  Y   A 
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612

Query: 126 EKRAEFDRAMTEYNKK 141
           E +  +   M+ YNK 
Sbjct: 613 EDKKRYKDEMSGYNKN 628


>Medtr8g099305.1 | high mobility group (HMG)-box protein | HC |
           chr8:41820095-41822791 | 20130731
          Length = 476

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIAT 125
           D  KPK P +AFF F  D R      N   K + ++ K   E+WK MT E+K  Y +IA 
Sbjct: 262 DPLKPKHPMSAFFLFTNDRRAAILADN---KGILEVSKITAEEWKNMTEEQKRPYEEIAK 318

Query: 126 EKRAEFDRAMTEYNKK 141
           + R ++ + M  Y +K
Sbjct: 319 KNREQYAQEMEAYKQK 334


>Medtr8g018100.1 | HMG (high mobility group) box protein | LC |
           chr8:6113156-6114530 | 20130731
          Length = 248

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 66  DANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWK 110
           D+N  K+ PT FF F+++FRK F+  N D K ++ +GK  GEKW+
Sbjct: 202 DSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEKWR 246