Miyakogusa Predicted Gene

Lj4g3v0279760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0279760.1 Non Characterized Hit- tr|I1K320|I1K320_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8628
PE=,54.05,0.0000000000003,seg,NULL,CUFF.46758.1
         (80 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094630.1 | transmembrane protein, putative | LC | chr4:38...    71   2e-13
Medtr4g094630.2 | transmembrane protein, putative | LC | chr4:38...    71   2e-13
Medtr4g094635.1 | transmembrane protein, putative | LC | chr4:38...    70   4e-13
Medtr5g091310.1 | transmembrane protein, putative | HC | chr5:39...    67   2e-12

>Medtr4g094630.1 | transmembrane protein, putative | LC |
          chr4:38413202-38412877 | 20130731
          Length = 74

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 3/59 (5%)

Query: 24 ETLRLKFLLPSL--FKWKRLRALQVSFTDNVVFKVLSAFEAIVLVFRACFFYLCCGCNF 80
          ETLRLKFL  S   F+W RL +  VSF +++VFKV+SAFEA+VLV   CFFYLCCGC+F
Sbjct: 17 ETLRLKFLWQSSSGFRWNRLTS-PVSFMEDIVFKVVSAFEAVVLVLTLCFFYLCCGCSF 74


>Medtr4g094630.2 | transmembrane protein, putative | LC |
          chr4:38413202-38411238 | 20130731
          Length = 74

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 3/59 (5%)

Query: 24 ETLRLKFLLPSL--FKWKRLRALQVSFTDNVVFKVLSAFEAIVLVFRACFFYLCCGCNF 80
          ETLRLKFL  S   F+W RL +  VSF +++VFKV+SAFEA+VLV   CFFYLCCGC+F
Sbjct: 17 ETLRLKFLWQSSSGFRWNRLTS-PVSFMEDIVFKVVSAFEAVVLVLTLCFFYLCCGCSF 74


>Medtr4g094635.1 | transmembrane protein, putative | LC |
          chr4:38428280-38422714 | 20130731
          Length = 90

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 2/58 (3%)

Query: 24 ETLRLKFLL-PSLFKWKRLRALQVSFTDNVVFKVLSAFEAIVLVFRACFFYLCCGCNF 80
          E LRLKFL   S FKW  L  L VSF ++VVFKV+SAFEA+VLV   CFFYLCCGC+F
Sbjct: 34 EALRLKFLWKSSSFKWNTL-TLPVSFMEDVVFKVVSAFEAVVLVLTLCFFYLCCGCSF 90


>Medtr5g091310.1 | transmembrane protein, putative | HC |
          chr5:39795299-39794872 | 20130731
          Length = 86

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 34 SLFKWKRLRALQVSFTDNVVFKVLSAFEAIVLVFRACFFYLCCGCNF 80
          S F+WKRL  LQ +F D VVF++LS  EA+VLV   CFFYLCCGC+F
Sbjct: 40 SAFRWKRLDHLQTTFMDTVVFRILSVAEAVVLVSTVCFFYLCCGCHF 86