Miyakogusa Predicted Gene

Lj4g3v0268740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0268740.1 tr|B9I102|B9I102_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_805855 PE=4
SV=1,36.52,0.000000000000008,seg,NULL,CUFF.46790.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g096660.1 | transcription factor bHLH144, putative | HC | ...   162   1e-40

>Medtr4g096660.1 | transcription factor bHLH144, putative | HC |
           chr4:38460062-38456658 | 20130731
          Length = 262

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 93/148 (62%), Gaps = 24/148 (16%)

Query: 1   MPTREYFLPEKAVLPLAGVAIDTCIHAPLASAF------------------------DAV 36
           M T EYFL  KAV PLA  AI TC++AP ASAF                        DAV
Sbjct: 1   MQTHEYFLSGKAVHPLADEAIGTCMNAPHASAFGTYMNAPHGSAFGTYMNLSHASTFDAV 60

Query: 37  LPPGVRQITPSERFKLQPSVICPKNFVICDQTRQQGRILVHPSMTSKFNSHGLMVHATCT 96
           LPP  RQITP ERF LQPS +CPKNF++ DQT QQ RIL HP+ T KFNS G   HATC 
Sbjct: 61  LPPSARQITPFERFNLQPSEVCPKNFIVFDQTDQQNRILFHPATTYKFNSPGFNSHATCN 120

Query: 97  QDLEKNKINQMEREFSSSFEEDPDDIDA 124
           QD EK+KINQME E SSSF ED  DIDA
Sbjct: 121 QDFEKDKINQMETELSSSFVEDSKDIDA 148