Miyakogusa Predicted Gene
- Lj4g3v0258610.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0258610.1 tr|A9RPM8|A9RPM8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,44.83,0.000000000000003,HYPOTHETICAL MEMBRANE PROTEIN,NULL;
FAMILY NOT NAMED,NULL; Cytochrom_B561,Cytochrome b561,
eukaryote,CUFF.46755.1
(184 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g096780.1 | eukaryotic cytochrome b561 protein | HC | chr4... 288 1e-78
Medtr4g096780.2 | eukaryotic cytochrome b561 protein | HC | chr4... 288 1e-78
Medtr3g046760.1 | eukaryotic cytochrome b561 protein | HC | chr3... 159 1e-39
Medtr7g051910.1 | auxin-responsive family protein | HC | chr7:18... 59 3e-09
Medtr4g133620.1 | auxin-responsive family protein | HC | chr4:55... 58 5e-09
Medtr3g058510.1 | auxin-responsive family protein, putative | LC... 57 1e-08
Medtr8g009880.1 | auxin-responsive family protein | HC | chr8:24... 57 1e-08
Medtr8g009880.2 | auxin-responsive family protein | HC | chr8:24... 57 1e-08
Medtr5g097620.1 | auxin-responsive family protein | HC | chr5:42... 56 2e-08
Medtr2g026080.1 | auxin-responsive family protein | HC | chr2:94... 53 1e-07
>Medtr4g096780.1 | eukaryotic cytochrome b561 protein | HC |
chr4:38511677-38507721 | 20130731
Length = 344
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 153/187 (81%), Gaps = 3/187 (1%)
Query: 1 MHLSCRRVYFVMVSFYISVLPFTECTAFEEVXXXXXXXXXXXXX---XHQKTSDIAVHGL 57
MH+S + FV+VSFY V+PFT+CT +EV HQK SDIA+HGL
Sbjct: 1 MHISYKSACFVIVSFYAFVIPFTQCTTLKEVNQFNSQRNTNSKVHKVNHQKASDIALHGL 60
Query: 58 LLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSLKKFE 117
LLW S+GFLMPLGILTIRGSNKAEPGSRR R+LFY HV FQMLSVLLATVGAAMSL KFE
Sbjct: 61 LLWGSVGFLMPLGILTIRGSNKAEPGSRRSRILFYFHVAFQMLSVLLATVGAAMSLIKFE 120
Query: 118 NSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLVGIINIYT 177
NSFDNNHQRLGLALY AIL QAFIGFFRPHRGKK+RSYWY +HWILGTIVSLVGIINI+T
Sbjct: 121 NSFDNNHQRLGLALYGAILVQAFIGFFRPHRGKKQRSYWYFVHWILGTIVSLVGIINIFT 180
Query: 178 GLKAYHQ 184
GLKAYH+
Sbjct: 181 GLKAYHK 187
>Medtr4g096780.2 | eukaryotic cytochrome b561 protein | HC |
chr4:38511793-38508259 | 20130731
Length = 268
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 153/187 (81%), Gaps = 3/187 (1%)
Query: 1 MHLSCRRVYFVMVSFYISVLPFTECTAFEEVXXXXXXXXXXXXX---XHQKTSDIAVHGL 57
MH+S + FV+VSFY V+PFT+CT +EV HQK SDIA+HGL
Sbjct: 1 MHISYKSACFVIVSFYAFVIPFTQCTTLKEVNQFNSQRNTNSKVHKVNHQKASDIALHGL 60
Query: 58 LLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSLKKFE 117
LLW S+GFLMPLGILTIRGSNKAEPGSRR R+LFY HV FQMLSVLLATVGAAMSL KFE
Sbjct: 61 LLWGSVGFLMPLGILTIRGSNKAEPGSRRSRILFYFHVAFQMLSVLLATVGAAMSLIKFE 120
Query: 118 NSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLVGIINIYT 177
NSFDNNHQRLGLALY AIL QAFIGFFRPHRGKK+RSYWY +HWILGTIVSLVGIINI+T
Sbjct: 121 NSFDNNHQRLGLALYGAILVQAFIGFFRPHRGKKQRSYWYFVHWILGTIVSLVGIINIFT 180
Query: 178 GLKAYHQ 184
GLKAYH+
Sbjct: 181 GLKAYHK 187
>Medtr3g046760.1 | eukaryotic cytochrome b561 protein | HC |
chr3:15506588-15509918 | 20130731
Length = 250
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Query: 51 DIAVHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
+I +HG LLWASMGFLMP+GIL IR SN+ E R R+LFY+H +FQ+++VLLAT GA
Sbjct: 59 EITLHGFLLWASMGFLMPIGILAIRLSNREE-NPRWLRILFYVHTIFQVIAVLLATAGAI 117
Query: 111 MSLKKFENSFDNNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
MS+K F N F+NNHQRLG+ALY I Q +G FRP RG K RS W+ HWILGT V+ +
Sbjct: 118 MSIKNFNNLFNNNHQRLGVALYGVIWLQVLVGIFRPQRGSKRRSVWFFAHWILGTAVTFL 177
Query: 171 GIINIYTGLKAYHQ 184
G++N+Y GL AYH+
Sbjct: 178 GVLNVYIGLAAYHE 191
>Medtr7g051910.1 | auxin-responsive family protein | HC |
chr7:18216668-18218785 | 20130731
Length = 394
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 49 TSDIAVHGLLLWASMGFLMPLGILTIRGSN---KAEPGSRRGRVLFYLHVVFQMLSVLLA 105
T +HG+L S G L PLG++ R A+P FY+H+ Q+ + ++
Sbjct: 201 TKKKNIHGVLNIVSWGILFPLGVIIARYMKIFPSADPA------WFYIHIGCQLSAYIIG 254
Query: 106 TVGAAMSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWI 162
G LK S ++H+ +G+ L+ Q F F RP + K R YW + H+
Sbjct: 255 VAGWGTGLKLGSESEGIQFSSHRNIGITLFCLATIQIFALFLRPSKDHKYRFYWNIYHYS 314
Query: 163 LGTIVSLVGIINIYTGLK 180
G + ++ I+NI+ G
Sbjct: 315 FGYAIIILAIVNIFRGFD 332
>Medtr4g133620.1 | auxin-responsive family protein | HC |
chr4:55896778-55894449 | 20130731
Length = 399
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 54 VHGLLLWASMGFLMPLGILTIR---GSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
HG+L S G LMP G + R A+P FYLH+ Q+ + ++ G
Sbjct: 209 THGVLNAISWGILMPTGAVIARYLKVFKSADPA------WFYLHITCQVSAYIVGLSGFG 262
Query: 111 MSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIV 167
LK +S + H+ L + L Q F F RP++ K R YW + H ++G +
Sbjct: 263 TGLKLGSDSVGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVT 322
Query: 168 SLVGIINIYTGLKA 181
+ I+N++ G +A
Sbjct: 323 ISISIVNVFKGFEA 336
>Medtr3g058510.1 | auxin-responsive family protein, putative | LC |
chr3:23252617-23253864 | 20130731
Length = 381
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 54 VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMSL 113
VH + S G LMP+G++ R + E G F LH Q +++LL TVG A L
Sbjct: 209 VHAIFNVISWGTLMPIGVIMARHLKRFE--GPTGSTWFQLHRACQSIALLLGTVGFATGL 266
Query: 114 KKFENSFDNN--HQRLGLALYAAILAQAFIG-FFRPHRGKKERSYWYLIHWILGTIVSLV 170
+N H+ +G+ L L Q F+ RP + K R +W + H+++G ++
Sbjct: 267 YMGNQPGIHNTPHKCVGITLMTLALVQVFVAILLRPKKDHKYRIWWNIFHFLVGYTTIIL 326
Query: 171 GIINIYTGLK 180
I N++ G
Sbjct: 327 AIWNVFKGFD 336
>Medtr8g009880.1 | auxin-responsive family protein | HC |
chr8:2452009-2453214 | 20130731
Length = 401
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 54 VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMS- 112
+HG L S G L+P+G +T R + G FY H Q+ + +L TVG A+
Sbjct: 213 IHGTLNAISWGILLPMGAITARYFRHIQ---SLGPAWFYAHAGIQLFAFILGTVGFAIGI 269
Query: 113 -LKKFENSFDNN-HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
L + + + H++LG+A++ Q FRP+ K R YW H +G ++
Sbjct: 270 HLGQLSPGVEYSLHRKLGVAVFCLGALQTLALLFRPNARNKFRKYWKSYHHFVGYSCVVL 329
Query: 171 GIINIYTGLK 180
G +N++ G +
Sbjct: 330 GFVNVFQGFE 339
>Medtr8g009880.2 | auxin-responsive family protein | HC |
chr8:2452009-2453214 | 20130731
Length = 401
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 54 VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAAMS- 112
+HG L S G L+P+G +T R + G FY H Q+ + +L TVG A+
Sbjct: 213 IHGTLNAISWGILLPMGAITARYFRHIQ---SLGPAWFYAHAGIQLFAFILGTVGFAIGI 269
Query: 113 -LKKFENSFDNN-HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
L + + + H++LG+A++ Q FRP+ K R YW H +G ++
Sbjct: 270 HLGQLSPGVEYSLHRKLGVAVFCLGALQTLALLFRPNARNKFRKYWKSYHHFVGYSCVVL 329
Query: 171 GIINIYTGLK 180
G +N++ G +
Sbjct: 330 GFVNVFQGFE 339
>Medtr5g097620.1 | auxin-responsive family protein | HC |
chr5:42769653-42767943 | 20130731
Length = 442
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 54 VHGLLLWASMGFLMPLGILTIRGSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVG--AAM 111
+HG+L S G L+P G +T R + G FY H QM +L TVG +
Sbjct: 253 IHGVLNAISWGILLPTGAITARYLRHFQ---TLGPSWFYAHAGIQMFGFILGTVGFGIGI 309
Query: 112 SLKKFENSFDNN-HQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIVSLV 170
L K + H++LG+A++ Q FRP+ K R YW H +G ++
Sbjct: 310 QLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWKSYHHFVGYSCVVL 369
Query: 171 GIINIYTGLK 180
G +N++ G +
Sbjct: 370 GFVNVFQGFE 379
>Medtr2g026080.1 | auxin-responsive family protein | HC |
chr2:9414194-9411663 | 20130731
Length = 402
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 54 VHGLLLWASMGFLMPLGILTIR---GSNKAEPGSRRGRVLFYLHVVFQMLSVLLATVGAA 110
HG+L S G LMPLG + R A+P FYLHV Q + ++ G
Sbjct: 212 THGVLNAISWGILMPLGAVIARYLKVFKSADP------AWFYLHVTCQSAAYIVGVAGWG 265
Query: 111 MSLKKFENSFD---NNHQRLGLALYAAILAQAFIGFFRPHRGKKERSYWYLIHWILGTIV 167
LK +S + H+ LG+ ++ Q F RP + K R YW L HW +G
Sbjct: 266 TGLKLGSDSAGVTYSTHRTLGIVIFCLGTLQVFALLLRPKKDHKIRFYWNLYHWGVGYAT 325
Query: 168 SLVGIINIYTGLKA 181
++ IINI+ G +A
Sbjct: 326 IIISIINIFKGFEA 339