Miyakogusa Predicted Gene

Lj4g3v0258600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0258600.1 Non Characterized Hit- tr|I3SUQ0|I3SUQ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98,0,RIBOSOMAL_S11,Ribosomal S11, conserved site; 40S RIBOSOMAL
PROTEIN S14,NULL; 40S RIBOSOMAL PROTEIN S,CUFF.46802.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g019670.1 | ribosomal protein S11 | HC | chr2:6475619-6472...   223   4e-59
Medtr4g096790.1 | ribosomal protein S11 | HC | chr4:38514698-385...   222   1e-58

>Medtr2g019670.1 | ribosomal protein S11 | HC | chr2:6475619-6472687
           | 20130731
          Length = 151

 Score =  223 bits (569), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 125/138 (90%)

Query: 2   SKRKVREPKEDNVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
           SKRKVREPKE+ VTLGPAV+DGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 3   SKRKVREPKEETVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV 62

Query: 62  KADRDESSPYAAMLAAQDVATRCKELGITALHIRLRAXXXXXXXXXXXXAQAALRALARS 121
           KADRDESSPYAAMLAAQDVATRCKELGITALHI+LRA            AQAALRALARS
Sbjct: 63  KADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARS 122

Query: 122 GMKIGRIEDVTPIPSDST 139
           GMK+GRIEDVTPIPSDST
Sbjct: 123 GMKVGRIEDVTPIPSDST 140


>Medtr4g096790.1 | ribosomal protein S11 | HC |
           chr4:38514698-38517460 | 20130731
          Length = 151

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 124/138 (89%)

Query: 2   SKRKVREPKEDNVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
           SKRKVREPKE+ VTLGPAV+DGE VFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 3   SKRKVREPKEETVTLGPAVKDGEQVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV 62

Query: 62  KADRDESSPYAAMLAAQDVATRCKELGITALHIRLRAXXXXXXXXXXXXAQAALRALARS 121
           KADRDESSPYAAMLAAQDVATRCKELGITALHI+LRA            AQAALRALARS
Sbjct: 63  KADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARS 122

Query: 122 GMKIGRIEDVTPIPSDST 139
           GMKIGRIEDVTPIPSDST
Sbjct: 123 GMKIGRIEDVTPIPSDST 140