Miyakogusa Predicted Gene
- Lj4g3v0244130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0244130.1 tr|Q1I184|Q1I184_PEA WD-40 repeat protein
OS=Pisum sativum GN=MSI1 PE=2 SV=1,94.69,0,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD40 repeats,WD40
repeat;,CUFF.46754.1
(223 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g096880.1 | nucleosome/chromatin assembly factor group pro... 393 e-110
Medtr4g073080.1 | nucleosome/chromatin assembly factor group pro... 192 1e-49
Medtr2g039250.1 | nucleosome/chromatin assembly factor group pro... 93 2e-19
Medtr2g100090.1 | nucleosome/chromatin assembly factor group pro... 75 3e-14
Medtr8g080700.1 | glutamate-rich WD repeat protein | HC | chr8:3... 55 4e-08
>Medtr4g096880.1 | nucleosome/chromatin assembly factor group
protein | HC | chr4:38572918-38568681 | 20130731
Length = 423
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/226 (87%), Positives = 206/226 (91%), Gaps = 4/226 (1%)
Query: 1 MGKXXXXXXXXXXXRLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKD 60
MGK R+INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDR EP GKD
Sbjct: 1 MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPSGKD 60
Query: 61 YSLQKVILGTHTSENEPNYLMLAQVQLPLHDSENDARHYDDD---LGGFGCANGKVQIIQ 117
YS+QK+ILGTHTSENEPNYLMLAQVQLPL DSENDARHYDDD +GGFGCANGKVQIIQ
Sbjct: 61 YSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQ 120
Query: 118 QINHDGEVNRARYMPQNPFIIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTE 177
QINHDGEVNRARYMPQN F+IATKT+SAEVYVFDYSKHPSKPP+DGSCNPDLRLRGHNTE
Sbjct: 121 QINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTE 180
Query: 178 GYGLSWSKFKEGHLLSGSDDAQICLWDINGGTPKNKSLDAMQIFKV 223
GYGLSWSKFK+GHLLSGSDDAQICLWDIN GTPKNKSLDA QIFKV
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDIN-GTPKNKSLDAHQIFKV 225
>Medtr4g073080.1 | nucleosome/chromatin assembly factor group
protein | HC | chr4:27640107-27642823 | 20130731
Length = 405
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 12/203 (5%)
Query: 21 YKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEP-PGKDYSLQKVILGTHTSENEPNY 79
+ +WK+N+P LYDL I+H L WPSLTV+WLP +P ++L K++L THTS+ EPNY
Sbjct: 17 FSVWKRNTPLLYDLFISHPLAWPSLTVQWLPSPPQPHSNSSFNLHKLLLATHTSDEEPNY 76
Query: 80 LMLAQVQLPLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIA 139
LMLA+ LP + S+ ++ KV+I Q+I DGEVNRAR MPQN ++A
Sbjct: 77 LMLAESTLPGNPSQPIIATDPEN-----PILPKVEITQRILVDGEVNRARAMPQNANVVA 131
Query: 140 TKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTEGYGLSWSKFKEGHLLSGSDDAQ 199
KT ++ VYVFD++K + CNPD RL+GH EGYGLSWS FK G+LLSGS+D +
Sbjct: 132 AKTCNSVVYVFDFTKKRGE-----GCNPDFRLKGHEKEGYGLSWSGFKNGYLLSGSNDHK 186
Query: 200 ICLWDINGGTPKNKSLDAMQIFK 222
ICLWD+ G + N LDA+ +++
Sbjct: 187 ICLWDVFGASESN-VLDAVHVYE 208
>Medtr2g039250.1 | nucleosome/chromatin assembly factor group
protein | HC | chr2:17196765-17189459 | 20130731
Length = 500
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 20/209 (9%)
Query: 17 INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKDYSLQKVILGTHTSENE 76
++E+Y WK P LYD + H L WPSL+ W P + K+ Q++ L T +
Sbjct: 58 VDEKYSQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSV 115
Query: 77 PNYLMLAQ---VQLPLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQ 133
PN L++A V+ + +E+ ++ ++ F V+ + I H GEVNR R +PQ
Sbjct: 116 PNTLVIANCEVVKTRVAAAEHISQFNEEARSPF------VKKYKTIIHPGEVNRIRELPQ 169
Query: 134 NPFIIATKTISAEVYVFDYSKHPSKPPLDGSCN--PDLRLRGHNTEG-YGLSWSKFKEGH 190
N I+AT T S +V ++D P++ + G+ N PDL L GH + L+ + +
Sbjct: 170 NSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TQPY 228
Query: 191 LLSGSDDAQICLWDI-----NGGTPKNKS 214
+LSG D + LW I + T NKS
Sbjct: 229 VLSGGKDKTVVLWSIEDHITSAATDSNKS 257
>Medtr2g100090.1 | nucleosome/chromatin assembly factor group
protein | HC | chr2:42972259-42978885 | 20130731
Length = 479
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 17 INEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRHEPPGKDYSLQKVILGTHTSENE 76
I E Y WK P LYD + H L WPS + W K+ ++ L T
Sbjct: 17 IEERYSQWKSLVPVLYDWLANHNLVWPSQSCRWGSLLDHATYKNR--HRLYLSEQTDGTA 74
Query: 77 PNYLMLAQVQL---PLHDSENDARHYDDDLGGFGCANGKVQIIQQINHDGEVNRARYMPQ 133
PN L++A ++ + +E+ A ++ F V+ ++ I H GEVNR R +P
Sbjct: 75 PNTLVIATCEIVKPRVAAAEHIAMFNEEARSPF------VKKVKTILHPGEVNRIRELPS 128
Query: 134 NPFIIATKTISAEVYVFDYSKHPSK--PPLDGSCN-PDLRLRGHNTEG-YGLSWSKFKEG 189
N I+AT T S V +++ P++ LD + PDL L GH + L+ E
Sbjct: 129 NTNIVATHTDSPNVMIWNVESQPNRNNAALDAPTSIPDLVLTGHKDNAEFALAMCS-TEP 187
Query: 190 HLLSGSDDAQICLWDI 205
+LSG D + LW I
Sbjct: 188 FVLSGGRDKLVVLWSI 203
>Medtr8g080700.1 | glutamate-rich WD repeat protein | HC |
chr8:34739832-34734055 | 20130731
Length = 469
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 116 IQQINHDGEVNRARYMPQNPFIIATKTISAEVYVFDYSKH---PSKPPLDG-----SCNP 167
++++ H+G +NR R M QNP I A+ S V ++D S H ++ DG +
Sbjct: 156 LRKVTHEGCINRIRSMAQNPHICASWAESGHVQIWDMSSHLNALAETETDGVQGVDAVQA 215
Query: 168 DLRLRGHNTEGYGLSWSKFKEGHLLSGSDDAQICLWD 204
L+ H EGY + WS G L+SG + I LW+
Sbjct: 216 PLQKFKHKDEGYAIDWSPLVPGRLVSGDCNNSIYLWE 252