Miyakogusa Predicted Gene
- Lj4g3v0216730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0216730.1 Non Characterized Hit- tr|A9NQT3|A9NQT3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,33.91,0.00000000001,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA
rec,CUFF.46710.1
(147 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 188 2e-48
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 1e-14
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 72 2e-13
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 3e-13
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-12
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-12
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-12
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-12
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 7e-11
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 63 8e-11
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 63 8e-11
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-11
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 4e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 5e-10
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-10
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 3e-08
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-08
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 54 4e-08
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 54 8e-08
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 9e-08
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 9e-08
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 9e-08
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 53 9e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 52 1e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-07
Medtr2g018390.1 | multiple RNA-binding domain protein, putative ... 52 3e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 3e-07
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 3e-07
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 3e-07
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 3e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 52 3e-07
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 5e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 7e-07
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 9e-07
Medtr4g074230.2 | RNA recognition motif (RRM) superfamily protei... 50 1e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 2e-06
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 2e-06
Medtr4g074230.1 | RNA recognition motif (RRM) superfamily protei... 49 2e-06
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 49 2e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 47 4e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 47 5e-06
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Query: 6 LASFPCFSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIA 65
LASFP ++ S + L SSLSMR +YPLASKI+VKNLPY TGE LQK+FSNFGKIA
Sbjct: 8 LASFPYYTPPNRSRLNLL-RSSLSMRHEYPLASKILVKNLPYFTGENALQKKFSNFGKIA 66
Query: 66 EVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPI 125
EV+MVKD +T+RSKG AFIQYTC+D AMLALETMDQ+ FYGRTI VE+ KL +F
Sbjct: 67 EVQMVKDVSTERSKGLAFIQYTCQDDAMLALETMDQQSFYGRTISVELEKLDVHNFVGSP 126
Query: 126 KTSGPPKKWNIPE-EEEVVDCWY 147
K SGPPKKWN+P + E VDCWY
Sbjct: 127 KASGPPKKWNLPAVQVEEVDCWY 149
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 33 DYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAA 92
+ P ++KI +K LP ST E L K FS FG++ +VK++ D T +S G+A+I + D+A
Sbjct: 66 NMPSSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSA 125
Query: 93 MLALETMDQKDFYGRTIYVEIAKLG 117
A + M+ K FYGR IYV IAK G
Sbjct: 126 QSAAKEMNGKLFYGRFIYVTIAKPG 150
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 71.6 bits (174), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
++ V+NLPYST E L++ FS FG +++V +V D +TKRSKG AFI ++ + A ALE
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 99 MDQKDFYGRTIYV 111
D F GR ++V
Sbjct: 960 SDNSIFQGRLLHV 972
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 58 FSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYV 111
FS FG +++V +V D +TKRSKG AFI ++ + A ALE D F GR ++V
Sbjct: 1228 FSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIFQGRLLHV 1281
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 24 PSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAF 83
P+SS + + K+ V L + T E TL+ F FG++ EVK++ D +KRSKGYAF
Sbjct: 178 PNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAF 237
Query: 84 IQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
I+YT +AA AL+ M+ K G I V++AK
Sbjct: 238 IEYTTEEAASAALKEMNGKIINGWMIVVDVAK 269
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
++ V+NLPYST E L++ FS FG +++ +V D +TKRSKG A+I ++ + A ALE
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 99 MDQKDFYGRTIYV 111
D F GR ++V
Sbjct: 390 SDNSIFQGRLLHV 402
Score = 50.1 bits (118), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
++K++VKN+ + E L++ FS FG+I +++ R G+AF++Y + A AL
Sbjct: 741 STKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHR--GFAFVEYVTQQEAQNAL 798
Query: 97 ETMDQKDFYGRTIYVEIAKLG 117
+ YGR + +E AK G
Sbjct: 799 TALSSTHLYGRHLVIERAKEG 819
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
S+I VKNLP E L++EFS G+I +VK+++ N K S+ +AFI + A A++
Sbjct: 25 SRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGK-SRQFAFIGFRTDQEAQAAIK 83
Query: 98 TMDQKDFYGRTIYVEIA-KLGWDDFDAP 124
++ + I E+A KLG + P
Sbjct: 84 YFNKSYLDTQAITCEVAQKLGDANLPRP 111
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+A K+ V L + T E TL FSN+G++ E K++ D +++SKGY F+ + +D A A
Sbjct: 30 IAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKA 89
Query: 96 LETMDQKDFYGRTIYVEIAKLGWD-DFDAPIKTSGPPKKWN 135
+ M++K GR ++V+ AK PI GPP+ N
Sbjct: 90 ITEMNEKALNGRVVFVDYAKPDTKRSMGMPI-ARGPPEDLN 129
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 12 FSTSKPSLVK-LRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMV 70
S S PSL + +R SS +K+ + + YST ET L++ FS +G + + K++
Sbjct: 23 LSMSTPSLFQAIRSMSS----------AKLFIGGVSYSTDETGLREAFSRYGDVLDAKII 72
Query: 71 KDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
D +T RS+G+ FI + + A AL+ MD K+ GRT+ V A
Sbjct: 73 MDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 12 FSTSKPSLVK-LRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMV 70
S S PSL + +R SS +K+ + + YST ET L++ FS +G + + K++
Sbjct: 23 LSMSTPSLFQAIRSMSS----------AKLFIGGVSYSTDETGLREAFSRYGDVLDAKII 72
Query: 71 KDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
D +T RS+G+ FI + + A AL+ MD K+ GRT+ V A
Sbjct: 73 MDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVNYA 116
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+++ V L + T E +L+ F NFG++ +V +V D R +G+AF++Y + + A+E
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 98 TMDQKDFYGRTIYVEIAK 115
M K GR I+VE+AK
Sbjct: 155 GMHGKFLDGRVIFVEVAK 172
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 63.2 bits (152), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
++ V NLPYST E L++ FS FG +++V ++ TKRSKG AFI ++ + A ALE
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 238
Query: 99 MDQKDFYGRTIYVEIAKLGWDDFDAPIKT 127
+ F GR + V AK ++ D KT
Sbjct: 239 SNNSIFQGRLLRVIPAKSNEENKDQGSKT 267
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
++K++V+N+ + + L++ FS FG+I ++K+ R G+AF++Y + A AL
Sbjct: 585 STKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHR--GFAFVEYVTQQEAQNAL 642
Query: 97 ETMDQKDFYGRTIYVEIAKLG 117
+ YGR + +E AK G
Sbjct: 643 TALSSTHLYGRHLVIERAKEG 663
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 63.2 bits (152), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
++ V NLPYST E L++ FS FG +++V ++ TKRSKG AFI ++ + A ALE
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 252
Query: 99 MDQKDFYGRTIYVEIAKLGWDDFDAPIKT 127
+ F GR + V AK ++ D KT
Sbjct: 253 SNNSIFQGRLLRVIPAKSNEENKDQGSKT 281
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
++K++V+N+ + + L++ FS FG+I ++K+ R G+AF++Y + A AL
Sbjct: 599 STKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHR--GFAFVEYVTQQEAQNAL 656
Query: 97 ETMDQKDFYGRTIYVEIAKLG 117
+ YGR + +E AK G
Sbjct: 657 TALSSTHLYGRHLVIERAKEG 677
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 63.2 bits (152), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 13 STSKPSLVKLRPSSSL-------SMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIA 65
+T S +KLR S S+ S P+ +K+ V + Y+T E +L FS +G++
Sbjct: 16 NTKITSELKLRSSPSVFQAIRCFSSTPN----TKLFVGGISYNTDEQSLSDAFSKYGQVL 71
Query: 66 EVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
+ +++ D + RSKG+ F+ Y + A A++ +D +D YGR + V A
Sbjct: 72 DARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 63.2 bits (152), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 13 STSKPSLVKLRPSSSL-------SMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIA 65
+T S +KLR S S+ S P+ +K+ V + Y+T E +L FS +G++
Sbjct: 16 NTKITSELKLRSSPSVFQAIRCFSSTPN----TKLFVGGISYNTDEQSLSDAFSKYGQVL 71
Query: 66 EVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
+ +++ D + RSKG+ F+ Y + A A++ +D +D YGR + V A
Sbjct: 72 DARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGVNFA 120
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ + + YST E +L++ FS +G++ + +++ D T RS+G+ FI + + A A++
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 98 TMDQKDFYGRTIYVEIAK 115
+D +D +GR + V A
Sbjct: 102 ALDGQDLHGRRVRVNYAN 119
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 22 LRPSSSLSMR-----PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTK 76
LRPSS R ++K+ V L +S E +L+ FS+FG + EV++V D ++
Sbjct: 15 LRPSSHPQFRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSG 74
Query: 77 RSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
R++G+ F+ ++ DAA A + MD K GR + + A
Sbjct: 75 RARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFA 112
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
++K+ V + YST + L++ F+ +G + + +++ D RSKG+ F+ + + A AL
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 97 ETMDQKDFYGRTIYVEIAK 115
+ MD ++ +GRT+ V A+
Sbjct: 99 QAMDNQELHGRTVRVNYAQ 117
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 24 PSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAF 83
P SS+ + +SK+ + L Y+ + +L+ F+ +G + E +++ D T RS+G+ F
Sbjct: 22 PVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGF 81
Query: 84 IQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
+ +T ++A AL +MD +D GR I V A
Sbjct: 82 VNFTSEESATSAL-SMDGQDLNGRNIRVSYAN 112
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V + YST E +L++ FS +G++ + +++ D T RS+G+ FI + + A A++
Sbjct: 51 HLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 110
Query: 99 MDQKDFYGRTIYVEIAK 115
+D +D +GR + V A
Sbjct: 111 LDGQDLHGRRVRVNYAN 127
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 16 KPSLV---KLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKD 72
KP+L+ + L RP P S++ + LP T + +++ G I E+K++KD
Sbjct: 81 KPALIDEEEREKHDELLSRP--PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKD 138
Query: 73 ANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPK 132
T SKGYAF+ Y ++ A A++ + K+F G+T+ +++ F I PK
Sbjct: 139 RETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNI-----PK 193
Query: 133 KWNIPEEEEVVD 144
W E + V+
Sbjct: 194 TWTEDEFRKAVE 205
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 16 KPSLV---KLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKD 72
KP+L+ + L RP P S++ + LP T + +++ G I E+K++KD
Sbjct: 81 KPALIDEEEREKHDELLSRP--PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKD 138
Query: 73 ANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPK 132
T SKGYAF+ Y ++ A A++ + K+F G+T+ +++ F I PK
Sbjct: 139 RETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNI-----PK 193
Query: 133 KWNIPEEEEVVD 144
W E + V+
Sbjct: 194 TWTEDEFRKAVE 205
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.0 bits (136), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 16 KPSLV---KLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKD 72
KP+L+ + L RP P S++ + LP T + +++ G I E+K++KD
Sbjct: 81 KPALIDEEEREKHDELLSRP--PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKD 138
Query: 73 ANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPK 132
T SKGYAF+ Y ++ A A++ + K+F G+T+ +++ F I PK
Sbjct: 139 RETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNI-----PK 193
Query: 133 KWNIPEEEEVVD 144
W E + V+
Sbjct: 194 TWTEDEFRKAVE 205
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 33 DYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAA 92
+ P ++KI +K LP ST E L K FS FG++ +VK++ D T +S G+A+I + D+A
Sbjct: 66 NMPSSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSA 125
Query: 93 MLALETMDQK 102
A + M+ K
Sbjct: 126 QSAAKEMNGK 135
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
K++V+NLP+ E ++ FS+ G + EV + + ++T SKG+AF+++TC+ A A+
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 99 MDQKDFYGRTIYVEIAK----LGWDDFDAPIKTSGPPK 132
++ F R I V+ A D DAP G K
Sbjct: 343 LNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQK 380
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 3 MSTLA--SFPCFSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSN 60
M+TL S S SKP R L +R + SKI VK L +ST E L + FS
Sbjct: 1 MATLGGISSSLLSHSKPCTSVFR---HLFLRR---ITSKIFVKGLAFSTTEEKLAEAFSQ 54
Query: 61 FGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEI 113
+G + + +V + KR KG+ ++ + + A A M+ K +GR +YV++
Sbjct: 55 YGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYVDM 107
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 9 FPCFSTSK--PSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAE 66
F ++SK ++ R L + + ++K+ + L Y+T ET L+ F G+I E
Sbjct: 2 FVHLTSSKLIATIANTRTLPQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIE 61
Query: 67 VKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLG 117
VK++ + T SKGY F+++ AA A + + + GR I V A G
Sbjct: 62 VKVICNHRTGESKGYGFVRFNSETAAATARKELHGQIVDGRRIRVGYAHKG 112
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T L+K FS +G+I + K++ D T RS+G+ F+ + + A+E
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR I V A+
Sbjct: 67 MNGQDLDGRNITVNQAQ 83
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T L+K FS +G+I + K++ D T RS+G+ F+ + + A+E
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR I V A+
Sbjct: 67 MNGQDLDGRNITVNQAQ 83
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 29 SMRPDYPLAS-KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYT 87
S+R + L S K+ + L T + L + FS FG++ E K++ D + RSKG+AF+ Y+
Sbjct: 25 SIRLNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYS 84
Query: 88 CRDAAMLALETMDQKDFYGRTIYVEIAK 115
+ A A E M+ K G I+V+ AK
Sbjct: 85 TIEEAEKAREGMNAKFLDGWVIFVDPAK 112
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 36 LASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+ +K+ V L + T + L+ FS FG + E ++ D NT+R KG+ F+ Y A A
Sbjct: 5 IGTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKA 64
Query: 96 LETMDQKDFYGRTIYVEIAK 115
+ ++ + GR I+VE AK
Sbjct: 65 RKALNGRIVDGRLIFVEHAK 84
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P+ T E L+ + G++AEV+++K K +KGYAF+ + ++ A
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMK---GKEAKGYAFVTFKTKELASK 154
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVV 143
AL+ ++ +F GR I +++ F + PK+W + + ++VV
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHRLFIGSV-----PKEWTVEDMKKVV 198
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P+ T E L+ + G++AEV+++K K +KGYAF+ + ++ A
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMK---GKEAKGYAFVTFKTKELASK 154
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVV 143
AL+ ++ +F GR I +++ F + PK+W + + ++VV
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHRLFIGSV-----PKEWTVEDMKKVV 198
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P+ T E L+ + G++AEV+++K K +KGYAF+ + ++ A
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMK---GKEAKGYAFVTFKTKELASK 154
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVV 143
AL+ ++ +F GR I +++ F + PK+W + + ++VV
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHRLFIGSV-----PKEWTVEDMKKVV 198
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAML 94
P S++ + +P+ T E L+ + G++AEV+++K K +KGYAF+ + ++ A
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMK---GKEAKGYAFVTFKTKELASK 154
Query: 95 ALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVV 143
AL+ ++ +F GR I +++ F + PK+W + + ++VV
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHRLFIGSV-----PKEWTVEDMKKVV 198
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T L++ FS FG+I + K++ D T RS+G+ F+ + + A+E
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR I V A+
Sbjct: 69 MNGQDIDGRNITVNEAQ 85
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+ + VKNL E L ++FS+FGKI + + KD N + SKG+ F+ Y D A A+E
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAME 252
Query: 98 TMDQKDFYGRTIYVEIAK 115
MD F + +YV A+
Sbjct: 253 AMDGSQFGSKILYVARAQ 270
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V L ++T L+K FS +G+I + K++ D T RS+G+ F+ + + A+E
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 99 MDQKDFYGRTIYVEIAK 115
M+ +D GR I V A+
Sbjct: 69 MNGQDMDGRNITVNEAQ 85
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+ V NLP+ ++L++ FS GK+ ++V D T RS+G+ F+ + A+
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 99 MDQKDFYGRTIYVEIAK 115
+D + F GR I V +A+
Sbjct: 277 LDGQSFNGRAIRVNVAE 293
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.1 bits (126), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L Y T E+ +++EF ++G I V++V DA + + +GYAFI+Y A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 100 DQKDFYGRTIYVEIAK 115
D + GR + V++ +
Sbjct: 197 DGRKIEGRRVLVDVER 212
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 53.1 bits (126), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L Y T E+ +++EF ++G I V++V DA + + +GYAFI+Y A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 100 DQKDFYGRTIYVEIAK 115
D + GR + V++ +
Sbjct: 197 DGRKIEGRRVLVDVER 212
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.1 bits (126), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L Y T E+ +++EF ++G I V++V DA + + +GYAFI+Y A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 100 DQKDFYGRTIYVEIAK 115
D + GR + V++ +
Sbjct: 197 DGRKIEGRRVLVDVER 212
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.1 bits (126), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L Y T E+ +++EF ++G I V++V DA + + +GYAFI+Y A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 100 DQKDFYGRTIYVEIAK 115
D + GR + V++ +
Sbjct: 197 DGRKIEGRRVLVDVER 212
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 32 PDYPLAS-KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRD 90
P YP K+ V NL ++ +L + F G + +++ D T +S+GY F+ Y +
Sbjct: 197 PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKS 256
Query: 91 AAMLALETMDQKDFYGRTIYVEIAK 115
AL MD + GRT+ V +A+
Sbjct: 257 EMDTALAIMDNVELEGRTLRVSLAQ 281
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+K+ NLPYS L +G ++++ D +T +S+G+AF+ +C + ++
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 98 TMDQKDFYGRTIYVEIA 114
+D K+F GRT+ V +
Sbjct: 173 NLDGKEFMGRTLRVNFS 189
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+++ V NL + L+ F G++ E K++ D + RS+G+ F+ ++ D A+
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 98 TMDQKDFYGRTIYVEIA 114
T+D D GR I V A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+++ V NL + L+ F G++ E K++ D + RS+G+ F+ ++ D A+
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 98 TMDQKDFYGRTIYVEIA 114
T+D D GR I V A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
+I V NL + + L++ FS GKI ++V D T RS+G+ F+ + A+
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 99 MDQKDFYGRTIYVEIAK 115
+D + GRTI V +A+
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + KD T S+G+AF++Y D
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + KD T S+G+AF++Y D
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + KD T S+G+AF++Y D
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + KD T S+G+AF++Y D
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 53 TLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMD-------QKDFY 105
TL+K FS +GK+ + K+++D T R +G+ F+ + + A AL+TM +D Y
Sbjct: 45 TLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTMSLAIKSMKNQDLY 104
Query: 106 GRTIYVEIA 114
GR + V A
Sbjct: 105 GRKVRVNYA 113
>Medtr2g018390.1 | multiple RNA-binding domain protein, putative |
HC | chr2:5813680-5808573 | 20130731
Length = 464
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 26 SSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQ 85
S+ ++ + P + ++ V+NLPY+T E L++ FS FG +++V +V D TKRSKG A+I
Sbjct: 205 SNPEVKKEVPESCRLFVRNLPYTTTEEELEEYFSQFGSVSQVHLVVDKETKRSKGIAYIH 264
Query: 86 YTCRDAA 92
++ D A
Sbjct: 265 FSVPDFA 271
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + +D T S+G+AF++Y D
Sbjct: 10 PDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + +D T S+G+AF++Y D
Sbjct: 10 PDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + +D T S+G+AF++Y D
Sbjct: 10 PDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 32 PDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDA 91
PD ++V N+ + T L F +GK+ ++ + +D T S+G+AF++Y D
Sbjct: 10 PDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADE 69
Query: 92 AMLALETMDQKDFYGRTIYVEIAKLG 117
A A++ +D + GR I V+ AK G
Sbjct: 70 ASKAVDRLDGRMVDGREITVQFAKYG 95
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 22 LRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGY 81
++ S +S PD + + +KNL ET L+++FS+FGKI + + KD+N SKG+
Sbjct: 174 VKKSDRISSGPDTRY-TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGF 231
Query: 82 AFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAK 115
F+ + + A A+ETM+ + +YV A+
Sbjct: 232 GFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQ 265
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 18 SLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKR 77
S+V+ +P S + + I V+NL Y+ + ++ F + G+I ++++ D K
Sbjct: 273 SIVENKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDREGK- 331
Query: 78 SKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIA 114
KG+A +Q+ DAA AL ++K FY R ++V IA
Sbjct: 332 FKGHAHVQFATADAAQKAL-VFNKKVFYNRLMFVGIA 367
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 39 KIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALET 98
K+ V+ L T TL+ FS++G + E ++ D T RSKGY F+ Y D A+LAL+
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 99 MDQKDFYGRTIYVEIAKLGWDDFD 122
+K GR ++A G D
Sbjct: 137 PSKK-IDGRMTVTQLAAAGSTGGD 159
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 24 PSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAF 83
P SS+ + +SK+ + L Y+ + +L+ F+ +G + E +++ D T RS+G+ F
Sbjct: 22 PVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGF 81
Query: 84 IQYTCRDAAMLALETMDQK 102
+ +T ++A AL +MD +
Sbjct: 82 VNFTSEESATSAL-SMDGQ 99
>Medtr4g074230.2 | RNA recognition motif (RRM) superfamily protein |
HC | chr4:28258835-28264509 | 20130731
Length = 353
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVK--------MVKDANTKRSKGYAFIQY 86
P I V NLPY T + L + F G I + K + D T KG A + Y
Sbjct: 10 PSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYHDKETNEPKGDATVTY 69
Query: 87 TCRDAAMLALETMDQKDFYGRTIYVEIAK 115
AA+ A+E + KDF+G TI V IA+
Sbjct: 70 EDPHAAVAAVEWFNNKDFHGNTIGVYIAE 98
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
++ + V L T TL++ F FG++ ++V D + SKG+ F++Y + A +
Sbjct: 50 STNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGI 109
Query: 97 ETMDQKDFYGRTIYVEIAK 115
E MD K G I+ E A+
Sbjct: 110 EGMDGKFLEGWVIFAEYAR 128
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALE 97
+++ V L + T E +L+ F NFG++ +V +V D R +G+AF++Y + + A+E
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 98 TMDQK 102
M K
Sbjct: 155 GMHGK 159
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+K+ V L + T + T++K F FG+I E ++ D T RSKGY F+ + DAAM A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 38 SKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLA 95
+K+ V L + T + T++K F FG+I E ++ D T RSKGY F+ + DAAM A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr4g074230.1 | RNA recognition motif (RRM) superfamily protein |
HC | chr4:28258835-28265511 | 20130731
Length = 384
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 35 PLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVK--------MVKDANTKRSKGYAFIQY 86
P I V NLPY T + L + F G I + K + D T KG A + Y
Sbjct: 10 PSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYHDKETNEPKGDATVTY 69
Query: 87 TCRDAAMLALETMDQKDFYGRTIYVEIAK 115
AA+ A+E + KDF+G TI V IA+
Sbjct: 70 EDPHAAVAAVEWFNNKDFHGNTIGVYIAE 98
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 37 ASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLAL 96
+ + +KN+ S E L++ FS FG I K++ DA RSKG F+ +T + A A+
Sbjct: 303 GANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAI 361
Query: 97 ETMDQKDFYGRTIYVEIAK 115
+ M+ K + +YV +A+
Sbjct: 362 DEMNGKIIGQKPVYVSVAQ 380
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 40 IVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETM 99
+ V L E+ L F FG I +VK D T++ + + F+ + R+ A A++ M
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 100 DQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKW 134
D + YGR + V ++ P K G + W
Sbjct: 72 DGAELYGRVLTV--------NYALPEKIKGGEQGW 98
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 34 YPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAM 93
Y ++ + V +P+ E + F+ +G++ ++ +V+D T +SKG+AFI Y + +
Sbjct: 32 YKDSAYVFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTN 91
Query: 94 LALETMDQKDFYGRTIYVE 112
LA++ ++ GR I V+
Sbjct: 92 LAVDNLNGAQVSGRIIRVD 110