Miyakogusa Predicted Gene

Lj4g3v0200060.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0200060.1 Non Characterized Hit- tr|I0YI33|I0YI33_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.37,1e-18,Nucleotid_trans,Nucleotide-diphospho-sugar transferase;
seg,NULL; UNCHARACTERIZED,NULL; RETICULON,Re,CUFF.46638.1
         (354 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094738.1 | nucleotide-diphospho-sugar transferase family ...   564   e-161
Medtr8g069400.1 | nucleotide-diphospho-sugar transferase family ...    65   8e-11
Medtr8g007400.1 | nucleotide-diphospho-sugar transferase family ...    58   2e-08
Medtr8g007395.1 | nucleotide-diphospho-sugar transferase family ...    53   4e-07
Medtr1g044340.1 | nucleotide-diphospho-sugar transferase family ...    52   6e-07
Medtr0223s0010.1 | nucleotide-diphospho-sugar transferase family...    51   2e-06
Medtr8g007405.1 | nucleotide-diphospho-sugar transferase family ...    49   6e-06

>Medtr4g094738.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | chr4:38866889-38872192 | 20130731
          Length = 357

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/357 (78%), Positives = 295/357 (82%), Gaps = 3/357 (0%)

Query: 1   MSSFLHQRSLTNPL--SNPFPVSSPS-TNSKKPISIXXXXXXXXXXXXXXXXXXXCPWVG 57
           MS FLHQRSL NP   SNPFP S PS TN KKP+SI                    PWVG
Sbjct: 1   MSGFLHQRSLHNPFQFSNPFPSSQPSSTNPKKPLSIFSPAILLSLLSLIIVLGVFSPWVG 60

Query: 58  MPYGLSFTSKPAVSKWGHYTLEQALSFVARNGTVIVCIVSQPYLPFLNNWLISISMQKRQ 117
           MP  L FTS P VSKWG YTL++AL+FVA+NGTVIVCIVSQPYLPFLNNWLISI+M KR 
Sbjct: 61  MPQKLIFTSNPEVSKWGRYTLDEALTFVAKNGTVIVCIVSQPYLPFLNNWLISIAMHKRH 120

Query: 118 DMVLVIAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILE 177
           DMVLVIAEDY SLYKVN+LWPGHAVLIPPVL+ E +HKFGS+GFFNFTARRPSHLLKILE
Sbjct: 121 DMVLVIAEDYPSLYKVNQLWPGHAVLIPPVLDLEASHKFGSQGFFNFTARRPSHLLKILE 180

Query: 178 HGYSVMYNDVDMVWLADPFPYLVGNHDVYFTDDMTEIKPLNHSHDLPPPGKKGRPYICSC 237
            GYSVMYNDVDMVWL DPFPYL GNHDVYFTDDMT IKPLNHSHDLPPPGKKGRPYICSC
Sbjct: 181 LGYSVMYNDVDMVWLGDPFPYLQGNHDVYFTDDMTAIKPLNHSHDLPPPGKKGRPYICSC 240

Query: 238 MIFLHPTDGSXXXXXXXXXXXXXQPWSRTKKSNDQPAFNWALMKNAKEVDLYLLPQPAFP 297
           MIFL PTDG+             +PWSRTKKSNDQPAFNWALMKNAK VD+YLLPQ AFP
Sbjct: 241 MIFLRPTDGAKLILKKWMEELQIEPWSRTKKSNDQPAFNWALMKNAKGVDMYLLPQSAFP 300

Query: 298 TGGLYFKNKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHAKESPLGTL 354
           TGGLYFKNKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVD+H +ESPLG L
Sbjct: 301 TGGLYFKNKTWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDEHKQESPLGRL 357


>Medtr8g069400.1 | nucleotide-diphospho-sugar transferase family
            protein | HC | chr8:29073407-29058020 | 20130731
          Length = 1877

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 121/290 (41%), Gaps = 40/290 (13%)

Query: 76   YTLEQALSFVA-RNGTVIVCIVSQPYLPFLNNWLISISMQKRQDMVLVIAEDYYSLYKVN 134
            ++LE  LS  A RN TV++ +    Y   L +W+  +     ++ ++   +     + + 
Sbjct: 1376 FSLESLLSITADRNKTVVLTVAGYSYKDMLMSWVCRLRKLSIENFIVSALDQETYQFSIL 1435

Query: 135  ELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVDMVWLAD 194
            +  P     I P   + D   FG+K F   T  +   +LKIL+ GY+V+ +DVD  W  +
Sbjct: 1436 QGIPVFKDPIAPSDISFDECHFGTKCFQRVTKVKSRIVLKILKLGYNVLLSDVDTYWFRN 1495

Query: 195  PFPYLVG-NHDVYF--TDDMTEIKPLNHSHDLPPPGKKGRPYICSCMIFLHPTDGSXXXX 251
            P P+L    H V    +D+  E  P+N    LP     G  Y  S    +   D      
Sbjct: 1496 PIPFLNSFGHAVLVAQSDEYQEQGPIN----LPRRLNSGFYYAHSDNQTIAAIDKVVKH- 1550

Query: 252  XXXXXXXXXQPWSRTKKSNDQPAF--------------NWALMKNAKEVDLYLLPQPAFP 297
                        + T   ++QP+F              +   ++    V ++ L +  FP
Sbjct: 1551 ------------AETSGLSEQPSFYDILCGKGGSNRVSDNKCVEPETNVTVHFLDRNLFP 1598

Query: 298  TGGLY--FKNKTWVKET--KGKHVIIHNNYIVGFEKKIKRFRDYGLWLVD 343
             G     +++KT VK T  K    IIHNN+I G  KK+ R    GLW  D
Sbjct: 1599 NGAYQNLWQDKT-VKATCLKKGCYIIHNNWISGRLKKLTRQVLSGLWEYD 1647


>Medtr8g007400.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | chr8:1520909-1517715 | 20130731
          Length = 352

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 78  LEQALS--FVARNGTVIVCIVSQPYLP-------------FLNNWLISISMQKRQDMVLV 122
           L++AL+   +  N TVI+ +V++ Y+              FL+++ +    +   D +L+
Sbjct: 64  LDKALAKASIRNNKTVIIAMVNKAYVEQDVNGDTITMFDLFLSSFWLGEGTRSLIDNLLI 123

Query: 123 IAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSV 182
           +A D  +  +   L      L    ++ E    + S+ F N   RR S LL++L+HGY+ 
Sbjct: 124 VAVDQTAYDRCQFLRLNCYKLETDGVDFEGEKIYMSQDFINMMWRRTSFLLEVLKHGYNF 183

Query: 183 MYNDVDMVWLADPFPYLVGNH--------DVYFTDDMTEIKPLN 218
           ++ D D++WL +PF  L  N         D Y  D  +E   +N
Sbjct: 184 IFTDTDVMWLRNPFKKLSKNETEDLQISTDSYLNDPWSEKHQIN 227


>Medtr8g007395.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | chr8:1516720-1512491 | 20130731
          Length = 358

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 78  LEQALS--FVARNGTVIVCIVSQPYLP-------------FLNNWLISISMQKRQDMVLV 122
           L++AL+   +  N TVI+ IV++ Y+              FL+++ +    +   D +L+
Sbjct: 63  LDKALAKASMGNNKTVIIAIVNKAYVEQDVMGDAVTMFDLFLSSFWLGEGTRSLIDNLLI 122

Query: 123 IAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSV 182
           +A D  +  +   L      L    ++      + S+ F     RR S LL++L+ GY++
Sbjct: 123 VAVDQTAYDRCQFLRLNCYRLETYGVDFGGEKIYMSQEFIKMMWRRTSFLLEVLKRGYNL 182

Query: 183 MYNDVDMVWLADPFPYLVGNH--------DVYFTDDMTEIKPLNHSHDLPPPGKK 229
           ++ D D++WL +PF  L  N         DVY  D  +E   +N         KK
Sbjct: 183 IFTDTDVMWLRNPFERLSKNETEDLQISTDVYLGDPWSEKHLINTGFFFVRSNKK 237


>Medtr1g044340.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | chr1:16644782-16643150 | 20130731
          Length = 308

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 78  LEQALSFVA-RN-GTVIVCIVSQPYLP-------------FLNNWLISISMQKRQDMVLV 122
           L++AL+  + RN  TVI+ I+++ Y+              FL+++ +    +   D +L+
Sbjct: 12  LDKALAKASMRNYKTVIIAIINKAYVEQDVKGDAITMFDLFLSSFWLGEGTRSLIDNLLI 71

Query: 123 IAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSV 182
           +A D  +  +   L      L    ++      F SK F N   RR   LL++L+ GY+ 
Sbjct: 72  VAVDQTAYDRCQFLRLNCYKLETDGVDFGGEKLFMSKDFINMMWRRTFFLLEVLKRGYNF 131

Query: 183 MYNDVDMVWLADPFPYLVGN--HDVYFTDDMTEIKPLNHSH 221
           ++ D D++WL +PF  L  N   D+  + D+    P +  H
Sbjct: 132 IFTDTDVMWLRNPFEKLSNNETEDLQISTDLYLDDPWSEKH 172


>Medtr0223s0010.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | scaffold0223:11789-7445 | 20130731
          Length = 394

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 65  TSKPAVSKWGHYTLEQALSFVA-RNGTVIVCIVSQPYLP-------FLNNWLISISMQKR 116
            S  + +    Y LE+ L+  A  + TVI+  +++ +         FL+++ I +  ++ 
Sbjct: 88  ASNDSATTRNEYPLEKILNEAAMEDRTVILTTLNEAWAAPNSVIDLFLDSFRIGVRTRRL 147

Query: 117 QDMVLVIAEDYYSLYKVNELWPGHAVLIPPVLEAEDAHK---FGSKGFFNFTARRPSHLL 173
            + +++IA D  +  +   +   H      V E  D H+   F +  +     RR   L 
Sbjct: 148 LNHLVIIALDQKAFVRCQAI---HTYCFLLVSEGNDFHEEAFFMTPLYLKMMWRRIDFLR 204

Query: 174 KILEHGYSVMYNDVDMVWLADPFPYLVGNHD 204
            +LE GY+ ++ D D++W  DPFP    + D
Sbjct: 205 SVLELGYNFVFTDADIMWFRDPFPRFYDDAD 235


>Medtr8g007405.1 | nucleotide-diphospho-sugar transferase family
           protein | HC | chr8:1524892-1522069 | 20130731
          Length = 351

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 85  VARNGTVIVCIVSQPYLP-------------FLNNWLISISMQKRQDMVLVIAEDYYSLY 131
           +  N T+I+ +V++ Y+              FLN++ +    +   D +L++A D  +  
Sbjct: 69  MGNNKTLIIAVVNKAYVEQDVKGDPTTMFDLFLNSFWLGEGTRSLVDNILIVAVDQTAYD 128

Query: 132 KVNELWPGHAVLIPPVLEAEDAHKFGSKGFFNFTARRPSHLLKILEHGYSVMYNDVDMVW 191
           +   L      L    ++      + S+ F N    R   LL+IL+ GY+ ++ D D++W
Sbjct: 129 RCQFLKLNCYKLETDGVDFGGEKLYMSQDFINMMWTRTFFLLEILKRGYNFIFTDTDVMW 188

Query: 192 LADPFPYLVGNH--------DVYFTDDMTEIKPLN 218
           L +PF  L  +         D YF D  +E   +N
Sbjct: 189 LRNPFEKLSNDETEDFQISTDEYFGDPWSEKNRVN 223