Miyakogusa Predicted Gene

Lj4g3v0190050.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0190050.2 Non Characterized Hit- tr|B8AEM4|B8AEM4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.8,1e-18,SUBFAMILY NOT NAMED,NULL; CCR4-NOT TRANSCRIPTION
COMPLEX RELATED,NULL; seg,NULL; ZF_RING_2,Zinc fing,CUFF.46637.2
         (349 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g008950.1 | anti-virus transcriptional factor, putative | ...   130   2e-30
Medtr4g107090.1 | hypothetical protein | HC | chr4:44228925-4422...   122   8e-28
Medtr4g107090.3 | hypothetical protein | HC | chr4:44228937-4422...   122   8e-28
Medtr4g107090.4 | hypothetical protein | HC | chr4:44228937-4422...   122   8e-28
Medtr4g107090.2 | hypothetical protein | HC | chr4:44228937-4422...   122   8e-28
Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    69   9e-12
Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   2e-11
Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   2e-11
Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   2e-11
Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   3e-11
Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   3e-11
Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    67   3e-11

>Medtr6g008950.1 | anti-virus transcriptional factor, putative | HC
           | chr6:2516081-2513329 | 20130731
          Length = 313

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 97/180 (53%), Gaps = 14/180 (7%)

Query: 172 AVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDSNSKPASGRLVPWGSGNVR 231
           AVADAL A+       S+ P    EH    V   AA       SK      V     + R
Sbjct: 138 AVADALNANSNEHSMVSESPI---EHTINYVDSEAAKKDF---SKKEFSSAVSESHMSCR 191

Query: 232 AWRADDAFRPQSLPNLSKQHSMPNPDRYCGG---VPWSPN---SAPSSCPICFEDLDLTD 285
           AW+ DDA RP+ LP+LSK H+      + G    VPWS     S PS CPIC+EDLD+TD
Sbjct: 192 AWKPDDALRPRCLPDLSKPHNSQLNSNWHGSHKIVPWSWRTIVSQPSQCPICYEDLDVTD 251

Query: 286 TSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYEREPVETEASVVGGSLTLRLARSCSM 345
           + FLPC CGF LCLFCHK+I+E DGRCPGCRK Y+   V+        +    + +SC M
Sbjct: 252 SEFLPCSCGFHLCLFCHKKIVEADGRCPGCRKLYDH--VDGTVGFNIETNDFYMTQSCHM 309



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 22 KKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVDDDGHALPSPAAGKQGKGSLQ- 80
          KKKRTN SAKLKQ K+D RREQWL++  VK KGC   VD  G     P+A        Q 
Sbjct: 14 KKKRTNGSAKLKQIKLDVRREQWLSR--VK-KGCD--VDSTGRVDSYPSAKHIASEENQP 68

Query: 81 -QLEMRREGDEDDGLI 95
             E+RR+G ED   I
Sbjct: 69 SYKEIRRKGREDGTCI 84


>Medtr4g107090.1 | hypothetical protein | HC |
           chr4:44228925-44225359 | 20130731
          Length = 251

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 75/120 (62%), Gaps = 4/120 (3%)

Query: 1   MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
           M SD           NTKNPGKKKRTNRSAKLKQYKIDARREQWL+QGAVK KGCKDG+D
Sbjct: 1   MGSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLD 60

Query: 61  DDGHALPSPAAGKQGKGSLQQLEMRREGDEDDGLIHQXX---XXXXXXXXXXXXXLCGND 117
           DD H   SP  GKQ K  ++++  RR G EDD LIHQ                  LCGND
Sbjct: 61  DDVHVSSSP-VGKQSKREMEKVGTRRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGND 119



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 172 AVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDS---NSKPASGRLVPWGSG 228
           AVADALAAD+K++          DE V +T       +G  S   +SKP SG  VP  SG
Sbjct: 175 AVADALAADEKHRAS------PQDEPVVETDSSCEVTDGLSSGCLDSKPGSGGTVPRASG 228

Query: 229 NVRAWRADDAFRPQSLPNL 247
           N +AWRADDAFRPQ+LPNL
Sbjct: 229 NGKAWRADDAFRPQTLPNL 247


>Medtr4g107090.3 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 75/120 (62%), Gaps = 4/120 (3%)

Query: 1   MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
           M SD           NTKNPGKKKRTNRSAKLKQYKIDARREQWL+QGAVK KGCKDG+D
Sbjct: 1   MGSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLD 60

Query: 61  DDGHALPSPAAGKQGKGSLQQLEMRREGDEDDGLIHQXX---XXXXXXXXXXXXXLCGND 117
           DD H   SP  GKQ K  ++++  RR G EDD LIHQ                  LCGND
Sbjct: 61  DDVHVSSSP-VGKQSKREMEKVGTRRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGND 119



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 172 AVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDS---NSKPASGRLVPWGSG 228
           AVADALAAD+K++          DE V +T       +G  S   +SKP SG  VP  SG
Sbjct: 175 AVADALAADEKHRAS------PQDEPVVETDSSCEVTDGLSSGCLDSKPGSGGTVPRASG 228

Query: 229 NVRAWRADDAFRPQSLPNL 247
           N +AWRADDAFRPQ+LPNL
Sbjct: 229 NGKAWRADDAFRPQTLPNL 247


>Medtr4g107090.4 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 75/120 (62%), Gaps = 4/120 (3%)

Query: 1   MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
           M SD           NTKNPGKKKRTNRSAKLKQYKIDARREQWL+QGAVK KGCKDG+D
Sbjct: 1   MGSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLD 60

Query: 61  DDGHALPSPAAGKQGKGSLQQLEMRREGDEDDGLIHQXX---XXXXXXXXXXXXXLCGND 117
           DD H   SP  GKQ K  ++++  RR G EDD LIHQ                  LCGND
Sbjct: 61  DDVHVSSSP-VGKQSKREMEKVGTRRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGND 119



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 172 AVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDS---NSKPASGRLVPWGSG 228
           AVADALAAD+K++          DE V +T       +G  S   +SKP SG  VP  SG
Sbjct: 175 AVADALAADEKHRAS------PQDEPVVETDSSCEVTDGLSSGCLDSKPGSGGTVPRASG 228

Query: 229 NVRAWRADDAFRPQSLPNL 247
           N +AWRADDAFRPQ+LPNL
Sbjct: 229 NGKAWRADDAFRPQTLPNL 247


>Medtr4g107090.2 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 75/120 (62%), Gaps = 4/120 (3%)

Query: 1   MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
           M SD           NTKNPGKKKRTNRSAKLKQYKIDARREQWL+QGAVK KGCKDG+D
Sbjct: 1   MGSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLD 60

Query: 61  DDGHALPSPAAGKQGKGSLQQLEMRREGDEDDGLIHQXX---XXXXXXXXXXXXXLCGND 117
           DD H   SP  GKQ K  ++++  RR G EDD LIHQ                  LCGND
Sbjct: 61  DDVHVSSSP-VGKQSKREMEKVGTRRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGND 119



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 172 AVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDS---NSKPASGRLVPWGSG 228
           AVADALAAD+K++          DE V +T       +G  S   +SKP SG  VP  SG
Sbjct: 175 AVADALAADEKHRAS------PQDEPVVETDSSCEVTDGLSSGCLDSKPGSGGTVPRASG 228

Query: 229 NVRAWRADDAFRPQSLPNL 247
           N +AWRADDAFRPQ+LPNL
Sbjct: 229 NGKAWRADDAFRPQTLPNL 247


>Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:28798997-28807271 | 20130731
          Length = 908

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 6/63 (9%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPVET 326
           SCPIC E++DLTD    PC CG+ +C++C   I+      E +GRCP CR PY++E +  
Sbjct: 8   SCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPYDKERIVA 67

Query: 327 EAS 329
            A+
Sbjct: 68  MAA 70


>Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+++C++C   I+      E +GRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYDKEKI 65


>Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+++C++C   I+      E +GRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYDKEKI 65


>Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+++C++C   I+      E +GRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYDKEKI 65


>Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596011-22605283 | 20130731
          Length = 1042

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+ +C++C   I+      + DGRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKI 65


>Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596005-22605283 | 20130731
          Length = 1042

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+ +C++C   I+      + DGRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKI 65


>Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596008-22605283 | 20130731
          Length = 1042

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
           +CP+C E++DLTD    PC CG+ +C++C   I+      + DGRCP CR PY++E +
Sbjct: 8   TCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKI 65