Miyakogusa Predicted Gene

Lj4g3v0189910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0189910.1 CUFF.46633.1
         (283 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094762.1 | basic helix loop helix (BHLH) DNA-binding fami...   272   3e-73
Medtr4g094758.1 | transcription factor | HC | chr4:38910460-3890...   238   5e-63
Medtr1g056700.1 | helix loop helix DNA-binding domain protein | ...    68   1e-11

>Medtr4g094762.1 | basic helix loop helix (BHLH) DNA-binding family
           protein | HC | chr4:38924047-38922213 | 20130731
          Length = 486

 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 182/329 (55%), Positives = 206/329 (62%), Gaps = 68/329 (20%)

Query: 1   MHEQTGCFDPNTMAEGV----------------------------------------SSQ 20
           MHEQ GCFDPNT  EGV                                        S+ 
Sbjct: 11  MHEQNGCFDPNTKDEGVENSPNDNNTNNNNSLEENFKPSVEELPYHNHQNSQHLDDVSTY 70

Query: 21  KDSF-PQTLLDPQPQSLMVTENTTNSNNIMDNHLVQEVIDAPLYQQSTWDPNVQEVQDMS 79
            + F P ++   Q Q+L +  N  N+ N MDNHLVQEV     YQ STWDP+VQ   DM 
Sbjct: 71  TNGFTPSSVDIEQLQNLGL--NIGNTYNNMDNHLVQEV-----YQNSTWDPSVQ---DMD 120

Query: 80  YANH------PEQQFQH-IDAQNY--CQSYTPS-ILDPSYPSPDLLNFLHLPTCSASSLL 129
           Y NH       EQQ+Q  I+AQN+    SY PS ILDP YPSPD+LN L+LP CS+S  L
Sbjct: 121 YVNHQEHRQLSEQQYQQFIEAQNHNQ--SYNPSTILDPHYPSPDVLNLLNLPRCSSSL-L 177

Query: 130 TNPPNICISNPTQRTPNFQNSMTFLGDLPMG-PDNTSASSVLYDPLFHLNLPPQPPALRE 188
           TN   IC++NPTQ  PNF NSMTFLGDLP+G  DNTS SSVLYDPL+ LNLPPQPPALRE
Sbjct: 178 TNSSTICMTNPTQNPPNFHNSMTFLGDLPIGSSDNTSGSSVLYDPLYPLNLPPQPPALRE 237

Query: 189 LFQSLPRGYRLPTSSRDDSLFGGGDEMEGDGSQLDMGVLDFNRDTASVGKGREGKGAKPF 248
           LFQSLPRGY +PT+SR+ SLF      +      DMGVL+FNR TASVGKGR GK  K F
Sbjct: 238 LFQSLPRGYSMPTNSRNGSLF---GGGDEMEGDGDMGVLEFNRVTASVGKGRGGKATKHF 294

Query: 249 ATEKDRREQLNGKYKILRSLIPNPTKVHR 277
           ATEK RREQLNGKYKILR LIP+PTK  R
Sbjct: 295 ATEKQRREQLNGKYKILRDLIPSPTKTDR 323


>Medtr4g094758.1 | transcription factor | HC |
           chr4:38910460-38908595 | 20130731
          Length = 483

 Score =  238 bits (607), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/329 (48%), Positives = 183/329 (55%), Gaps = 70/329 (21%)

Query: 1   MHEQTGCFDPNTMAEGV------------------------------------------- 17
           MHEQTGCFDP+TMAEGV                                           
Sbjct: 11  MHEQTGCFDPDTMAEGVENSPEDNNSPQTMPNQVVAGNSNNSIEENFRPSVEEFSYHNHH 70

Query: 18  --------SSQKDSFPQTLLDPQPQSLMVTENTTNSNNIMDNHLVQEVIDAPLYQQSTWD 69
                   S+  + F  +  +   Q+L +       NN MDN L QEV     YQ S+WD
Sbjct: 71  SPQHLEDVSTYTNGFTPSSENIAQQNLGLNIGNYYYNN-MDNLLEQEV-----YQNSSWD 124

Query: 70  PNVQEVQDMSYANHPEQQFQHIDAQNYCQSYTPSILD-PSYPSPDLLNFLHLPTCSASSL 128
           P+    QDM YANH E    H    N+ QSY PS    P YPSPD+LN LH P  SASSL
Sbjct: 125 PS---AQDMDYANHQEYHQLH----NHKQSYNPSTTQAPHYPSPDVLN-LHFPRSSASSL 176

Query: 129 LTNPPNICISNPTQRTPNFQNSMTFLGDLPMGPDNTSASSVLYDPLFHLNLPPQPPALRE 188
           LTNP  ICI+NPTQ+ PNF  SM+FLGDLP+G DN+S SSVLYDPLF LNLP Q PALRE
Sbjct: 177 LTNPSTICITNPTQKPPNFHYSMSFLGDLPIGSDNSSGSSVLYDPLFPLNLPAQSPALRE 236

Query: 189 LFQSLPRGYRLPTSSRDDSLFGGGDEMEGDGSQLDMGVLDFNRDTASVGKGREGKGAKPF 248
           L QSLPR Y +PT+SR+ S F      +       MGV  FN+ TA VGKG+ GK  +  
Sbjct: 237 LPQSLPRVYSMPTNSRNGSPF---GGGDEMEGDGGMGVSQFNKVTAFVGKGK-GKATEHL 292

Query: 249 ATEKDRREQLNGKYKILRSLIPNPTKVHR 277
            TEK RREQL G+YKILRSLIPN TK  R
Sbjct: 293 TTEKQRREQLKGRYKILRSLIPNSTKDDR 321


>Medtr1g056700.1 | helix loop helix DNA-binding domain protein | LC
           | chr1:24802464-24803623 | 20130731
          Length = 87

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 38/49 (77%)

Query: 226 VLDFNRDTASVGKGREGKGAKPFATEKDRREQLNGKYKILRSLIPNPTK 274
           VL+FNR TASVGKGR GK  + FATEK RR+QLNGK KILR LI  P +
Sbjct: 11  VLEFNRVTASVGKGRGGKATEHFATEKQRRKQLNGKCKILRDLILIPLR 59