Miyakogusa Predicted Gene

Lj4g3v0189780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0189780.1 tr|A9RYS0|A9RYS0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_179489,52.63,4e-17,coiled-coil,NULL,CUFF.46619.1
         (81 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094792.1 | complex I subunit | HC | chr4:39011736-3901138...   147   2e-36

>Medtr4g094792.1 | complex I subunit | HC | chr4:39011736-39011386
          | 20130731
          Length = 85

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)

Query: 1  MVLSATAIGALLGLGTQMYSNALRKLPYMRHPWEHVLGMGIGVVFVNQLLKWEAQVERDL 60
          MVLSATAIGALLGLGTQMYSNALRKLPYMRHPWEHVLGMG+GVV VNQLLKWEAQVE+DL
Sbjct: 1  MVLSATAIGALLGLGTQMYSNALRKLPYMRHPWEHVLGMGLGVVAVNQLLKWEAQVEQDL 60

Query: 61 DVMLERAKAANERRYIDA 78
          D MLE+AKAANERRYI +
Sbjct: 61 DKMLEKAKAANERRYIGS 78