Miyakogusa Predicted Gene

Lj4g3v0177480.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0177480.1 Non Characterized Hit- tr|J3LVA3|J3LVA3_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB04G1,31,5e-19,Bet
v1-like,NULL; START,Lipid-binding START; SUBFAMILY NOT NAMED,NULL;
PHOSPHATIDYLCHOLINE TRANSFER
,NODE_55881_length_1221_cov_54.047501.path2.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005140.1 | homeobox/lipid-binding domain protein | HC | c...   386   e-108
Medtr3g092640.1 | membrane-related protein CP5, putative | HC | ...   101   6e-22
Medtr5g007030.2 | mammalian STARD2 lipid-binding START domain pr...    97   2e-20
Medtr5g007030.1 | mammalian STARD2 lipid-binding START domain pr...    96   2e-20
Medtr1g078030.1 | mammalian STARD2 lipid-binding START domain pr...    91   8e-19

>Medtr4g005140.1 | homeobox/lipid-binding domain protein | HC |
           chr4:85012-80984 | 20130731
          Length = 381

 Score =  386 bits (992), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/250 (76%), Positives = 204/250 (81%), Gaps = 2/250 (0%)

Query: 1   MLRNFYMDNDYRKQWDKTVVEHNQLQVDESDGTEVGRTVKKFPLLKPREYVLTWKLWEGR 60
           MLRNFYMDNDYRKQWDKTVVEHNQLQVD+SDG+EVGRTVKKFPLLKPREYVLTWKLWEGR
Sbjct: 134 MLRNFYMDNDYRKQWDKTVVEHNQLQVDKSDGSEVGRTVKKFPLLKPREYVLTWKLWEGR 193

Query: 61  DNFFYCYMKECEHPLAPRLRKYVRVEFYRSGWRIRQIPGQNACEITMFHQEVAGLNMEMA 120
           D  FYCY+KECEH LAPR  KYVRVEF+RSGWRIRQ+PG+NACEITMFHQE AGLN+EMA
Sbjct: 194 DKTFYCYIKECEHTLAPRQNKYVRVEFFRSGWRIRQVPGRNACEITMFHQEDAGLNVEMA 253

Query: 121 KLAFSKGIWSYVCKMDNALRSYSAISGQLXXXXXXXXNLLQKVPAWLDSSTRNISPAHRT 180
           KLAFSKGIWSYVCKMDNALR YSA SG L        NL+QKVPA L+SST   S +H T
Sbjct: 254 KLAFSKGIWSYVCKMDNALRRYSAASGHLSSSVTSSVNLMQKVPACLESSTSYASSSHPT 313

Query: 181 TIHDHVTNESEARVISRRPSRKXXXXXXXXXXXXVCLSRGHSSLGAKVAMAYILTKLSKH 240
            IHD  T+ES+ RVISRRPSRK            +CLSRGHSSLGAKVAMAYI +KL K 
Sbjct: 314 IIHDQTTHESQVRVISRRPSRKFLANSVLLVGGAICLSRGHSSLGAKVAMAYIFSKLRK- 372

Query: 241 GAASNQRKQS 250
              SNQ KQS
Sbjct: 373 -TNSNQTKQS 381


>Medtr3g092640.1 | membrane-related protein CP5, putative | HC |
           chr3:42338841-42335197 | 20130731
          Length = 424

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 10/150 (6%)

Query: 1   MLRNFYMDNDYRKQWDKTVVEHNQLQVDESDGTEVGRTVKKFPLL-KPREYVLTWKLWE- 58
           M+R+ + D+ +R +WD  +V    L+   + GT   + ++KFP   K REY++  ++WE 
Sbjct: 180 MVRDLFWDDQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWEC 239

Query: 59  GRDNFFYCYMKECEHPLAPRLRKYVRVEFYRSGWRIRQIP-----GQ-NACEITMFHQEV 112
           GR   +YC  K  + P  PR  K  RV+ Y S W IR +      GQ  ACEI +FH E 
Sbjct: 240 GRS--YYCITKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEILLFHHEE 297

Query: 113 AGLNMEMAKLAFSKGIWSYVCKMDNALRSY 142
            G+  E+AKL   KG+W  V K++  LR+Y
Sbjct: 298 MGIPWEIAKLGVRKGMWGMVQKIEPGLRAY 327


>Medtr5g007030.2 | mammalian STARD2 lipid-binding START domain
           protein | HC | chr5:1173861-1179345 | 20130731
          Length = 326

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 8/149 (5%)

Query: 1   MLRNFYMDNDYRKQWDKTVVEHNQLQVDESDGTEVGRTVKKFPLL-KPREYVLTWKLWEG 59
           ++R+F+ D+D+R +WD  +     L+    +GT +   +KKFP     REY++  ++W+ 
Sbjct: 87  LVRDFFWDDDFRPKWDPMLAHCKVLKECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQA 146

Query: 60  RDNFFYCYMKECEHPLAPRLRKYVRVEFYRSGWRIRQI-----PGQ-NACEITMFHQEVA 113
             N +YC  K   +P  P+  K  RV+ Y S W I+ +      GQ +ACE+T+ H E  
Sbjct: 147 -GNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDM 205

Query: 114 GLNMEMAKLAFSKGIWSYVCKMDNALRSY 142
           G+  ++AKL    G+W  V K+ + +R+Y
Sbjct: 206 GIPKDVAKLGVRHGMWGAVKKLHSGMRAY 234


>Medtr5g007030.1 | mammalian STARD2 lipid-binding START domain
           protein | HC | chr5:1173758-1179345 | 20130731
          Length = 436

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 8/149 (5%)

Query: 1   MLRNFYMDNDYRKQWDKTVVEHNQLQVDESDGTEVGRTVKKFPLL-KPREYVLTWKLWEG 59
           ++R+F+ D+D+R +WD  +     L+    +GT +   +KKFP     REY++  ++W+ 
Sbjct: 197 LVRDFFWDDDFRPKWDPMLAHCKVLKECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQA 256

Query: 60  RDNFFYCYMKECEHPLAPRLRKYVRVEFYRSGWRIRQI-----PGQ-NACEITMFHQEVA 113
             N +YC  K   +P  P+  K  RV+ Y S W I+ +      GQ +ACE+T+ H E  
Sbjct: 257 -GNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDM 315

Query: 114 GLNMEMAKLAFSKGIWSYVCKMDNALRSY 142
           G+  ++AKL    G+W  V K+ + +R+Y
Sbjct: 316 GIPKDVAKLGVRHGMWGAVKKLHSGMRAY 344


>Medtr1g078030.1 | mammalian STARD2 lipid-binding START domain
           protein | HC | chr1:34888325-34884479 | 20130731
          Length = 395

 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 7/148 (4%)

Query: 1   MLRNFYMDNDYRKQWDKTVVEHNQLQVDESDGTEVGRTVKKFPLL-KPREYVLTWKLWEG 59
           ++R+F+ D+++R +WD  ++  + +Q  E  GT + + V+KFP     REY++  ++W+ 
Sbjct: 153 LVRDFFWDDEFRSRWDDMLIHASTIQECEVTGTMMVQWVRKFPFFCSDREYIIGRRIWDA 212

Query: 60  RDNFFYCYMKECEHPLAPRLRKYVRVEFYRSGWRIRQI----PGQ-NACEITMFHQEVAG 114
            +  +YC  K       PR  K  RV+ Y S + IR +     GQ  +CE+  FH E  G
Sbjct: 213 -ERTYYCVTKGVPCSSIPRQSKPRRVDLYYSSFFIRAVKSRKDGQLTSCEVLFFHYEDMG 271

Query: 115 LNMEMAKLAFSKGIWSYVCKMDNALRSY 142
           +  E+AKL   +G+W  V K D  LR+Y
Sbjct: 272 IPWEIAKLGVRQGMWGAVKKFDPGLRTY 299