Miyakogusa Predicted Gene

Lj4g3v0166430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0166430.1 Non Characterized Hit- tr|G7IEX4|G7IEX4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,79.49,0.00000000003,seg,NULL,CUFF.46594.1
         (434 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g010860.1 | PPR repeat protein, putative | HC | chr5:30004...   245   6e-65
Medtr6g043130.1 | Cgi-62, putative | HC | chr6:14896057-14895675...    75   2e-13

>Medtr5g010860.1 | PPR repeat protein, putative | HC |
           chr5:3000454-3002417 | 20130731
          Length = 199

 Score =  245 bits (625), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 151/200 (75%), Gaps = 26/200 (13%)

Query: 158 LYESLVNDVNIRLASLNGIREKSIGVALEAAGGLYRRLAKKFPKKGPCTYKRRELATSME 217
           +YESLVN+VNIRLASLNGI +K IGVALEAA GL+RRLAKKFPKKGPCTYKRRELATS E
Sbjct: 1   MYESLVNEVNIRLASLNGIHDKFIGVALEAAIGLHRRLAKKFPKKGPCTYKRRELATSTE 60

Query: 218 TRTRFPELVIQEEKRVRFVVVNGLK------------IVEKPNSVPIDDAEWFKRLTGRN 265
           TRTRFPELVIQEEKRVRFVVVNGLK            IVE+   + IDDA WFKRL  RN
Sbjct: 61  TRTRFPELVIQEEKRVRFVVVNGLKPQPPPKKVKGLIIVER---LKIDDAGWFKRLICRN 117

Query: 266 EVAISDADYKFYSPRH---KYRRGTSISLANIPDIPVTN--YPGADNSTSLATTQGFRSP 320
           EVAIS  DYKFYSPRH   +YRRG SISL NIP IP++   Y GADNST+L TTQG+RS 
Sbjct: 118 EVAISANDYKFYSPRHRYSRYRRGASISLPNIPHIPLSMVFYLGADNSTTLTTTQGYRSK 177

Query: 321 Q-----TPC-KHHLQSLPHQ 334
                 T C K ++Q +  Q
Sbjct: 178 SHTTLITLCAKDYMQQVLQQ 197


>Medtr6g043130.1 | Cgi-62, putative | HC | chr6:14896057-14895675 |
           20130731
          Length = 53

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 38/39 (97%)

Query: 129 QDKMSKRRVREVQYEGDPSFALPLMYVANLYESLVNDVN 167
           QDK++KR+ RE+QYEGDP+FALPLMYVAN+YESLVN+VN
Sbjct: 15  QDKLNKRKTREIQYEGDPNFALPLMYVANMYESLVNEVN 53