Miyakogusa Predicted Gene
- Lj4g3v0166400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0166400.1 Non Characterized Hit- tr|D7TAG1|D7TAG1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,67.95,0,coiled-coil,NULL; Remorin_C,Remorin, C-terminal; seg,NULL;
FAMILY NOT NAMED,NULL,CUFF.46592.1
(508 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g079482.1 | carboxy-terminal region remorin | HC | chr8:34... 213 4e-55
Medtr8g079482.2 | carboxy-terminal region remorin | HC | chr8:34... 191 2e-48
Medtr8g080180.2 | carboxy-terminal region remorin | HC | chr8:34... 140 4e-33
Medtr8g080180.1 | carboxy-terminal region remorin | HC | chr8:34... 140 4e-33
Medtr8g023130.1 | carboxy-terminal region remorin | HC | chr8:82... 70 7e-12
Medtr1g019280.1 | carboxy-terminal region remorin | HC | chr1:57... 65 2e-10
Medtr1g019280.2 | carboxy-terminal region remorin | HC | chr1:57... 64 3e-10
>Medtr8g079482.1 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 528
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 177/545 (32%), Positives = 253/545 (46%), Gaps = 55/545 (10%)
Query: 1 MDYERIQKPQGNGGFSPGKLRSMLLGVXXXXXXXXXVDSTFTPGSQNPDMDESGGSSSDH 60
M+YERI+KPQ G SP KLR LLG T ++P+ S SS+D+
Sbjct: 1 MEYERIEKPQ-TGIISPSKLRMKLLGPRKKDGSNSNSSRTSPSRIEDPEFVNSLLSSNDY 59
Query: 61 CKDVDVVS-VLPDYSTSTARTWSIET--------AGGD-------RIGKVNAGITSK--- 101
D +V S L S+ +R ++ GD KV+ G +S
Sbjct: 60 NLDYEVTSPSLEALSSKPSRDAVLDLRLKEAMPGENGDTGHVKMQHFHKVDTGSSSTIHP 119
Query: 102 NRILEDPSLDYDSGQDNMSMSSSVFEFQKAERAPPRVPAGPFSKPAPSKWDDAQKWIASP 161
R ED +LDYDS SSS FEF K ER + +P PSKW+DA+KWI +
Sbjct: 120 VRTTEDENLDYDS-----QASSSSFEFDKGERPVSNHVSRSLLRPIPSKWNDAEKWIMNR 174
Query: 162 TSNRPKTAQSQGQGGHGGPRKVGSLGYGSRQSSMKVVVEVPDQREIALDEPDTKQ----- 216
+ + Q Q + S +V + + + +P +
Sbjct: 175 QHIQTRKNSIQSQAIRLPTSMARVIPESSNFDHKLPTSKVTETKRVDYCQPTSHSHMAFE 234
Query: 217 ----MDTDQTKMDSEGH-KFASYEVDPYAVANSYVSLSQHNSSVAIQSATTFVPPPSTAR 271
+ +D + + H K + E P + V+ + + + +I T F R
Sbjct: 235 KFSFVPSDAHSVSGQAHGKLSVVESFPQSRDLMEVNEADSSCTTSIDDQTAF----PGIR 290
Query: 272 SVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXXXXXXX------XXXXD 325
SV+MRDMGTEMTP+ SQEPS+T TPV S TP+R D
Sbjct: 291 SVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPTSSMPSTPRRGAPAPTPLGYTTDED 350
Query: 326 PHIDNLNLNKSELSEKELQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKAKTA 385
P N N K +LSE+E+++KTRREI LG QLGKMNIAAWASK++E+ + + A
Sbjct: 351 PQFRNENSRK-QLSEEEMKIKTRREIAALGMQLGKMNIAAWASKDDEESKKA----GRDA 405
Query: 386 DQPAKSVIXXXXXXX--XXXXXXKYMARFRREEMKIQAWENHQKAKTEAKMRKIEVEVER 443
D + I K+ AR +REE++IQAWE+ QKAK EA+MR+ E +VE+
Sbjct: 406 DTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKAKLEAEMRRTEAKVEQ 465
Query: 444 IRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYIRRTGHVP-SSYLTFS 502
+R+++H K++ K+A +T QAEYIR+TG +P S+Y+
Sbjct: 466 MRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYIRQTGKMPYSNYIMC- 524
Query: 503 WCSWC 507
C W
Sbjct: 525 -CGWL 528
>Medtr8g079482.2 | carboxy-terminal region remorin | HC |
chr8:34063857-34067628 | 20130731
Length = 438
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 215/439 (48%), Gaps = 44/439 (10%)
Query: 93 KVNAGITSK---NRILEDPSLDYDSGQDNMSMSSSVFEFQKAERAPPRVPAGPFSKPAPS 149
KV+ G +S R ED +LDYDS SSS FEF K ER + +P PS
Sbjct: 18 KVDTGSSSTIHPVRTTEDENLDYDS-----QASSSSFEFDKGERPVSNHVSRSLLRPIPS 72
Query: 150 KWDDAQKWIAS--PTSNRPKTAQSQGQGGHGGPRKVGSLGYGSRQSSMKV-VVEVPDQRE 206
KW+DA+KWI + R + QSQ P + + S K+ +V + +
Sbjct: 73 KWNDAEKWIMNRQHIQTRKNSIQSQAIRL---PTSMARVIPESSNFDHKLPTSKVTETKR 129
Query: 207 IALDEPDTKQ---------MDTDQTKMDSEGH-KFASYEVDPYAVANSYVSLSQHNSSVA 256
+ +P + + +D + + H K + E P + V+ + + + +
Sbjct: 130 VDYCQPTSHSHMAFEKFSFVPSDAHSVSGQAHGKLSVVESFPQSRDLMEVNEADSSCTTS 189
Query: 257 IQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXXX 316
I T F RSV+MRDMGTEMTP+ SQEPS+T TPV S TP+R
Sbjct: 190 IDDQTAF----PGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPTSSMPSTPRR 245
Query: 317 XXXX------XXXXDPHIDNLNLNKSELSEKELQMKTRREIMVLGTQLGKMNIAAWASKE 370
DP N N K +LSE+E+++KTRREI LG QLGKMNIAAWASK+
Sbjct: 246 GAPAPTPLGYTTDEDPQFRNENSRK-QLSEEEMKIKTRREIAALGMQLGKMNIAAWASKD 304
Query: 371 EEDKDASTSLKAKTADQPAKSVIXXXXXXX--XXXXXXKYMARFRREEMKIQAWENHQKA 428
+E+ + + AD + I K+ AR +REE++IQAWE+ QKA
Sbjct: 305 DEESKKA----GRDADTQEQERIEFEKRAALWEEAEKSKHTARLKREEIQIQAWESQQKA 360
Query: 429 KTEAKMRKIEVEVERIRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYI 488
K EA+MR+ E +VE++R+++H K++ K+A +T QAEYI
Sbjct: 361 KLEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSDEKRAQAEARKNREAERTAAQAEYI 420
Query: 489 RRTGHVP-SSYLTFSWCSW 506
R+TG +P S+Y+ C W
Sbjct: 421 RQTGKMPYSNYIMC--CGW 437
>Medtr8g080180.2 | carboxy-terminal region remorin | HC |
chr8:34442403-34445750 | 20130731
Length = 361
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 162/370 (43%), Gaps = 63/370 (17%)
Query: 143 FSKPAPSKWDDAQKWIASPTSNRPKTAQSQGQGGHGGPRKVGSLGYGSRQSSMKVVVEVP 202
KP PSKWDDAQKW+ + +GG G K S S ++++ VP
Sbjct: 49 MGKPTPSKWDDAQKWLVGLS-----------KGGEKGQSK--SKPRNSNADDLRLIAPVP 95
Query: 203 DQREIALDEPDTKQMDTDQTKMDSEGHKFASYEVDPYAV---ANSYVSLSQHNSSVAIQS 259
+ E D+ M T ++ ++E K E D ++ N+ L+++ +++ +QS
Sbjct: 96 QKEEEHDDDGCHDFMTTTSSEYEAEDSK--KVECDDESIWRMNNNSKVLAENKNTIHVQS 153
Query: 260 ATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXXXXXX 319
+ RDMGTEMTPIASQEPSRT TP+R
Sbjct: 154 -------------ICFRDMGTEMTPIASQEPSRTA------TPIRATTPTTRSPIHSGTS 194
Query: 320 XXXXXDPHIDNLNLNKSELSEKELQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTS 379
P + L + E + TR Q G EE
Sbjct: 195 T-----PMRNQNGLLQMEAASGNNGSTTR--------QCG-----------EESSPCKMV 230
Query: 380 LKAKTADQPAK-SVIXXXXXXXXXXXXXKYMARFRREEMKIQAWENHQKAKTEAKMRKIE 438
K K DQ K S + KYMARF+REEMKIQAWENHQ K E +M+K+E
Sbjct: 231 EKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMKKME 290
Query: 439 VEVERIRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYIRRTGHVPSSY 498
V+ ER+++ + +KL NKLA+ +T E+ +YIRRTGHVPSS+
Sbjct: 291 VKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTTERVDYIRRTGHVPSSF 350
Query: 499 -LTFSWCSWC 507
TF S C
Sbjct: 351 SFTFKLPSIC 360
>Medtr8g080180.1 | carboxy-terminal region remorin | HC |
chr8:34442437-34445750 | 20130731
Length = 361
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 162/370 (43%), Gaps = 63/370 (17%)
Query: 143 FSKPAPSKWDDAQKWIASPTSNRPKTAQSQGQGGHGGPRKVGSLGYGSRQSSMKVVVEVP 202
KP PSKWDDAQKW+ + +GG G K S S ++++ VP
Sbjct: 49 MGKPTPSKWDDAQKWLVGLS-----------KGGEKGQSK--SKPRNSNADDLRLIAPVP 95
Query: 203 DQREIALDEPDTKQMDTDQTKMDSEGHKFASYEVDPYAV---ANSYVSLSQHNSSVAIQS 259
+ E D+ M T ++ ++E K E D ++ N+ L+++ +++ +QS
Sbjct: 96 QKEEEHDDDGCHDFMTTTSSEYEAEDSK--KVECDDESIWRMNNNSKVLAENKNTIHVQS 153
Query: 260 ATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXXXXXX 319
+ RDMGTEMTPIASQEPSRT TP+R
Sbjct: 154 -------------ICFRDMGTEMTPIASQEPSRTA------TPIRATTPTTRSPIHSGTS 194
Query: 320 XXXXXDPHIDNLNLNKSELSEKELQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTS 379
P + L + E + TR Q G EE
Sbjct: 195 T-----PMRNQNGLLQMEAASGNNGSTTR--------QCG-----------EESSPCKMV 230
Query: 380 LKAKTADQPAK-SVIXXXXXXXXXXXXXKYMARFRREEMKIQAWENHQKAKTEAKMRKIE 438
K K DQ K S + KYMARF+REEMKIQAWENHQ K E +M+K+E
Sbjct: 231 EKNKIEDQARKLSPLESRAMAWDEAERAKYMARFKREEMKIQAWENHQIRKAEMEMKKME 290
Query: 439 VEVERIRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYIRRTGHVPSSY 498
V+ ER+++ + +KL NKLA+ +T E+ +YIRRTGHVPSS+
Sbjct: 291 VKAERMKAMAQEKLTNKLAATRRIAEEKRANAQVKLNDNALRTTERVDYIRRTGHVPSSF 350
Query: 499 -LTFSWCSWC 507
TF S C
Sbjct: 351 SFTFKLPSIC 360
>Medtr8g023130.1 | carboxy-terminal region remorin | HC |
chr8:8275146-8279407 | 20130731
Length = 463
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 56/343 (16%)
Query: 145 KPAPSKWDDAQKWIASPTSNRPKTAQSQGQGGHGGPRKVGSLGYGSRQS----SMKVVVE 200
K PSKWDDA+KW+ S + + + G V SL G+R K+
Sbjct: 93 KSFPSKWDDAEKWLISTSCHDSPAHNNNTLKG------VSSLESGTRHCDNGFKQKMEEG 146
Query: 201 VPDQREIALDEPDTKQMDTDQTKMDSEGHK-----FASYEVDP--YAVANSYVS------ 247
++ + ++ +K + Q+ S H F P + + Y
Sbjct: 147 FSEKSRVIEEKVLSKSVTNFQSSSSSLDHNNSVGAFNGISCPPTDIVLKDKYTDSIEPIL 206
Query: 248 -------------LSQHNSSVAIQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTG 294
L ++ + A+ + T V V +D+GTEMTP+ S SR
Sbjct: 207 PKFRYSEPTKEGFLFRNQACEAMHESYTEV-----IHEVKHKDVGTEMTPLGSSTTSRCH 261
Query: 295 TPVRSTTPMRXXXXXXXXXXXXXXXXXXXXDPHIDNLNLNKSELSEKELQMKTRREIMVL 354
TP +S++P R + N++ N + +L+ + +
Sbjct: 262 TPFKSSSPARHNTPASRSGPLA-----------LSNIDSNGCSVDAIQLE-ECHFSKLQF 309
Query: 355 GTQLGKMNIAAWASKEEEDKDASTSLKAKTADQPAKSVIXXXXXXXXXXXXXKYMARFRR 414
GT + W+S EEE+K+ S SL+ + + I K R++R
Sbjct: 310 GTTKYDLVAPNWSSSEEEEKEISKSLRHNASLKADSDCIAASWEEDEKN---KCCLRYQR 366
Query: 415 EEMKIQAWENHQKAKTEAKMRKIEVEVERIRSKSHDKLMNKLA 457
EE KIQAW N Q AK EA+ +K+EV+++++RS +KLM +++
Sbjct: 367 EEAKIQAWINLQNAKAEARSKKLEVKIQKMRSNLEEKLMKRMS 409
>Medtr1g019280.1 | carboxy-terminal region remorin | HC |
chr1:5782200-5777571 | 20130731
Length = 620
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 57/259 (22%)
Query: 256 AIQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXX 315
A + A T V P +VS RDM T+M+P E S +P T+
Sbjct: 409 AFKDAGTNVSP-----AVSRRDMATQMSP----EGSSCSSPNMMTS-------------- 445
Query: 316 XXXXXXXXXDPHIDNLNLNKSELSEKELQMKTR-------REIMVLGTQLGKMNIAAWAS 368
P D +++ S++ +++Q+ R ++ L T G N+ +W
Sbjct: 446 -FSASIPPTLPVTDLQSISFSKMDIRDVQVDERVTMTRWSKKHKALFTGRGSENVDSWKK 504
Query: 369 KEEEDKDASTSLKAKTADQPAKSVIXXXXXXXXXXXXXKYMARFRREEMKIQAWENHQKA 428
KE + +S + ++ K +++ +REE KI AWEN QKA
Sbjct: 505 KETSTRSSSWEISERS----------------------KTVSKAKREEAKITAWENLQKA 542
Query: 429 KTEAKMRKIEVEVERIRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYI 488
K EA ++K+E+++E+ R+ S DK+MNKL +T +
Sbjct: 543 KAEAAIQKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSF 602
Query: 489 RRTGHVPSSYLTFSWCSWC 507
RR G + S S C C
Sbjct: 603 RRAGQMGS----LSGCFTC 617
>Medtr1g019280.2 | carboxy-terminal region remorin | HC |
chr1:5781751-5777571 | 20130731
Length = 558
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 57/259 (22%)
Query: 256 AIQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRSTTPMRXXXXXXXXXXX 315
A + A T V P +VS RDM T+M+P E S +P T+
Sbjct: 347 AFKDAGTNVSP-----AVSRRDMATQMSP----EGSSCSSPNMMTS-------------- 383
Query: 316 XXXXXXXXXDPHIDNLNLNKSELSEKELQMKTR-------REIMVLGTQLGKMNIAAWAS 368
P D +++ S++ +++Q+ R ++ L T G N+ +W
Sbjct: 384 -FSASIPPTLPVTDLQSISFSKMDIRDVQVDERVTMTRWSKKHKALFTGRGSENVDSWKK 442
Query: 369 KEEEDKDASTSLKAKTADQPAKSVIXXXXXXXXXXXXXKYMARFRREEMKIQAWENHQKA 428
KE + +S + ++ K +++ +REE KI AWEN QKA
Sbjct: 443 KETSTRSSSWEISERS----------------------KTVSKAKREEAKITAWENLQKA 480
Query: 429 KTEAKMRKIEVEVERIRSKSHDKLMNKLASXXXXXXXXXXXXXXXXXXXXXKTEEQAEYI 488
K EA ++K+E+++E+ R+ S DK+MNKL +T +
Sbjct: 481 KAEAAIQKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSF 540
Query: 489 RRTGHVPSSYLTFSWCSWC 507
RR G + S S C C
Sbjct: 541 RRAGQMGS----LSGCFTC 555