Miyakogusa Predicted Gene

Lj4g3v0166390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0166390.1 Non Characterized Hit- tr|A5B306|A5B306_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.33,5e-17,zinc finger,Zinc finger, CCCH-type; zf-CCCH,Zinc
finger, CCCH-type; CCCH zinc finger,NULL; ZF_C3H1,Z,CUFF.46591.1
         (699 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114040.1 | nucleic acid-binding protein, putative | LC | ...   150   5e-36

>Medtr4g114040.1 | nucleic acid-binding protein, putative | LC |
           chr4:46926850-46930364 | 20130731
          Length = 594

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 77/120 (64%), Gaps = 16/120 (13%)

Query: 26  KRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGL 85
           KRNTDCVYFLASPLTCKKG ECEYRH E AR+NPRDC+YWL+GNCLNP C+FRHPP+DG 
Sbjct: 7   KRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPVDGH 66

Query: 86  IXXXXXXXXXXXXXXXXXQIATAAATHAPYNSAKQAVPCIFFQKGLCLKGDRCAFLHGPN 145
                               +    +  P  + K  V C FF  G C KG +C+FLHGP+
Sbjct: 67  TGVP----------------SEPTQSSLPATANKTMVTCYFFFNGFCNKGSKCSFLHGPD 110