Miyakogusa Predicted Gene
- Lj4g3v0166340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0166340.1 Non Characterized Hit- tr|I3SRC8|I3SRC8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.66,0,seg,NULL;
FAMILY NOT NAMED,NULL; DUF1084,Domain of unknown function
DUF1084,CUFF.46595.1
(297 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g033830.1 | tobamovirus multiplication-like protein | HC |... 430 e-121
Medtr4g094212.1 | tobamovirus multiplication-like protein | HC |... 292 3e-79
Medtr4g094212.2 | tobamovirus multiplication-like protein | HC |... 292 3e-79
Medtr1g033830.2 | tobamovirus multiplication-like protein | HC |... 289 2e-78
Medtr2g022880.1 | tobamovirus multiplication-like protein | HC |... 272 2e-73
Medtr4g131930.1 | tobamovirus multiplication-like protein | HC |... 261 5e-70
Medtr4g131930.2 | tobamovirus multiplication-like protein | HC |... 201 5e-52
Medtr2g022880.2 | tobamovirus multiplication-like protein | HC |... 198 4e-51
>Medtr1g033830.1 | tobamovirus multiplication-like protein | HC |
chr1:12230012-12237108 | 20130731
Length = 297
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/276 (76%), Positives = 228/276 (82%)
Query: 22 ESSSSSNWWRDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQKVFH 81
E + SS WW DI++SPLWQDRIF+ LA LYG+V+AIAL+QLVRIQLRVPEYGWTTQKVFH
Sbjct: 22 ELTDSSTWWNDIDDSPLWQDRIFYTLAGLYGVVSAIALIQLVRIQLRVPEYGWTTQKVFH 81
Query: 82 FLNXXXXXXXXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARA 141
FLN Q+LQPEI QHILLD+PSLAFFTTYALLVLFWAEIYYQARA
Sbjct: 82 FLNFVVNAVRCLVFIFFRNVQRLQPEIAQHILLDVPSLAFFTTYALLVLFWAEIYYQARA 141
Query: 142 VSTDGLRPSFYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXXXXX 201
VSTDGL+PSFY IN VVY VQI+LWLILWWKP+SVLVILSK+FFAGVS
Sbjct: 142 VSTDGLKPSFYIINVVVYAVQIILWLILWWKPVSVLVILSKVFFAGVSLFAALGFLLYGG 201
Query: 202 XXXXXXQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDVLDHPIL 261
QRFPVESKGRRKKLQEVGYVTTICF CFLIR VMMCF+AFDK A+L+V+DHPIL
Sbjct: 202 RLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLIRSVMMCFNAFDKNANLNVMDHPIL 261
Query: 262 NFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
NFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 262 NFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
>Medtr4g094212.1 | tobamovirus multiplication-like protein | HC |
chr4:37446139-37449467 | 20130731
Length = 289
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/279 (49%), Positives = 186/279 (66%)
Query: 19 NFTESSSSSNWWRDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQK 78
F E + + WW DI++S WQ I++ L Y V+ IAL+QLVRIQ+RVPEYGWTTQK
Sbjct: 11 TFIEGEAPTQWWNDIDDSDQWQRGIYYTLCAAYATVSFIALIQLVRIQMRVPEYGWTTQK 70
Query: 79 VFHFLNXXXXXXXXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQ 138
VFH +N ++P++ + +L+++P L FF+TY LLVLFWAEIY+Q
Sbjct: 71 VFHLMNFLVNGVRAVLFGLYKSVFAIRPKVFEQVLMEVPGLLFFSTYTLLVLFWAEIYHQ 130
Query: 139 ARAVSTDGLRPSFYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXX 198
AR+ LRP++++IN VVY++QI +W+ + + +K+F A +S
Sbjct: 131 ARSEPAQKLRPAYFSINGVVYLIQICIWIYMTASKTVAGIEAAKLFLAVISFCAALGFLL 190
Query: 199 XXXXXXXXXQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDVLDH 258
+RFP+ES+GR+KKL EVG VT+IC +CFLIRCV++ AFD+ ADLDVL H
Sbjct: 191 YGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCVLLAISAFDQEADLDVLSH 250
Query: 259 PILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
P+LN +YYLLVEI+PS+LVLFILRKLPPKR QYHPIR
Sbjct: 251 PMLNLVYYLLVEIVPSALVLFILRKLPPKRVSDQYHPIR 289
>Medtr4g094212.2 | tobamovirus multiplication-like protein | HC |
chr4:37446151-37449551 | 20130731
Length = 289
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/279 (49%), Positives = 186/279 (66%)
Query: 19 NFTESSSSSNWWRDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQK 78
F E + + WW DI++S WQ I++ L Y V+ IAL+QLVRIQ+RVPEYGWTTQK
Sbjct: 11 TFIEGEAPTQWWNDIDDSDQWQRGIYYTLCAAYATVSFIALIQLVRIQMRVPEYGWTTQK 70
Query: 79 VFHFLNXXXXXXXXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQ 138
VFH +N ++P++ + +L+++P L FF+TY LLVLFWAEIY+Q
Sbjct: 71 VFHLMNFLVNGVRAVLFGLYKSVFAIRPKVFEQVLMEVPGLLFFSTYTLLVLFWAEIYHQ 130
Query: 139 ARAVSTDGLRPSFYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXX 198
AR+ LRP++++IN VVY++QI +W+ + + +K+F A +S
Sbjct: 131 ARSEPAQKLRPAYFSINGVVYLIQICIWIYMTASKTVAGIEAAKLFLAVISFCAALGFLL 190
Query: 199 XXXXXXXXXQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDVLDH 258
+RFP+ES+GR+KKL EVG VT+IC +CFLIRCV++ AFD+ ADLDVL H
Sbjct: 191 YGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCVLLAISAFDQEADLDVLSH 250
Query: 259 PILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
P+LN +YYLLVEI+PS+LVLFILRKLPPKR QYHPIR
Sbjct: 251 PMLNLVYYLLVEIVPSALVLFILRKLPPKRVSDQYHPIR 289
>Medtr1g033830.2 | tobamovirus multiplication-like protein | HC |
chr1:12230012-12236055 | 20130731
Length = 224
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/202 (71%), Positives = 157/202 (77%)
Query: 22 ESSSSSNWWRDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQKVFH 81
E + SS WW DI++SPLWQDRIF+ LA LYG+V+AIAL+QLVRIQLRVPEYGWTTQKVFH
Sbjct: 22 ELTDSSTWWNDIDDSPLWQDRIFYTLAGLYGVVSAIALIQLVRIQLRVPEYGWTTQKVFH 81
Query: 82 FLNXXXXXXXXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARA 141
FLN Q+LQPEI QHILLD+PSLAFFTTYALLVLFWAEIYYQARA
Sbjct: 82 FLNFVVNAVRCLVFIFFRNVQRLQPEIAQHILLDVPSLAFFTTYALLVLFWAEIYYQARA 141
Query: 142 VSTDGLRPSFYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXXXXX 201
VSTDGL+PSFY IN VVY VQI+LWLILWWKP+SVLVILSK+FFAGVS
Sbjct: 142 VSTDGLKPSFYIINVVVYAVQIILWLILWWKPVSVLVILSKVFFAGVSLFAALGFLLYGG 201
Query: 202 XXXXXXQRFPVESKGRRKKLQE 223
QRFPVESKGRRKKLQE
Sbjct: 202 RLFLMLQRFPVESKGRRKKLQE 223
>Medtr2g022880.1 | tobamovirus multiplication-like protein | HC |
chr2:7962710-7966725 | 20130731
Length = 284
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 176/267 (65%), Gaps = 5/267 (1%)
Query: 31 RDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQKVFHFLNXXXXXX 90
RD +SPL F+ L + +++ IAL+QL+RI+LRVPEYGWTTQK+FH N
Sbjct: 23 RDSTHSPL-----FYTLCASFSLISFIALIQLIRIELRVPEYGWTTQKIFHLFNFIVSGV 77
Query: 91 XXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPS 150
L P+++ +LLD+P L FF+TY LLVLFWAEIY+QAR++ TD LR
Sbjct: 78 RALVFGFHAQVFFLHPKVLTLVLLDLPGLVFFSTYTLLVLFWAEIYHQARSLPTDKLRII 137
Query: 151 FYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXXXXXXXXXXXQRF 210
+ ++N VY++Q+ W+ LW V+ + K+F AGVS +RF
Sbjct: 138 YISVNGAVYLIQVGFWIYLWLDYNDVVDFIGKIFIAGVSFVAAIGFLIFGGRLFFMLKRF 197
Query: 211 PVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDVLDHPILNFIYYLLVE 270
P+ESKGRRKKLQEVG+VT ICF+CFLIR VM+ A D A LDVLDHPIL+FIYY++VE
Sbjct: 198 PIESKGRRKKLQEVGFVTIICFTCFLIRSVMVLVSAVDSDASLDVLDHPILDFIYYMVVE 257
Query: 271 ILPSSLVLFILRKLPPKRGITQYHPIR 297
ILPS++VLFILRKLPPKR QYH I
Sbjct: 258 ILPSAIVLFILRKLPPKRISAQYHDIH 284
>Medtr4g131930.1 | tobamovirus multiplication-like protein | HC |
chr4:55083666-55089675 | 20130731
Length = 278
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 174/271 (64%)
Query: 27 SNWWRDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQKVFHFLNXX 86
S+ DI + WQ IF+ ++ Y +V+ +AL QLVRIQLRVPEYGWTTQK+FH +N
Sbjct: 8 SSMEEDIAATTSWQSSIFYFISSAYAVVSFVALFQLVRIQLRVPEYGWTTQKIFHLMNFI 67
Query: 87 XXXXXXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDG 146
P++ +LLD+P L FF+TY LLVLFWAEIY+QAR++ TD
Sbjct: 68 LNGVRALVFGLHTLLFLFHPKVFVLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDM 127
Query: 147 LRPSFYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXXXXXXXXXX 206
L+ + +INA +Y++QI +W+ LW SV+ K+F GVS
Sbjct: 128 LKIIYISINAALYIIQICIWIYLWTDDNSVVEFFGKIFIGGVSFVAALGFLLYGGRLFCM 187
Query: 207 XQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFDAFDKAADLDVLDHPILNFIYY 266
+ FP+ESKGRRKKL EVG +T ICF+CFLIRCVM AFD LDVLDHPIL+ +YY
Sbjct: 188 LRHFPIESKGRRKKLHEVGSITAICFTCFLIRCVMGFLSAFDSDTSLDVLDHPILDLVYY 247
Query: 267 LLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
+LVE+LPS+LVL+ILRKLPP+R QYH I
Sbjct: 248 MLVEVLPSALVLYILRKLPPRRISAQYHAIH 278
>Medtr4g131930.2 | tobamovirus multiplication-like protein | HC |
chr4:55083666-55089675 | 20130731
Length = 215
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 122/177 (68%)
Query: 121 FFTTYALLVLFWAEIYYQARAVSTDGLRPSFYTINAVVYVVQIVLWLILWWKPISVLVIL 180
FF+TY LLVLFWAEIY+QAR++ TD L+ + +INA +Y++QI +W+ LW SV+
Sbjct: 39 FFSTYTLLVLFWAEIYHQARSLPTDMLKIIYISINAALYIIQICIWIYLWTDDNSVVEFF 98
Query: 181 SKMFFAGVSXXXXXXXXXXXXXXXXXXQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCV 240
K+F GVS + FP+ESKGRRKKL EVG +T ICF+CFLIRCV
Sbjct: 99 GKIFIGGVSFVAALGFLLYGGRLFCMLRHFPIESKGRRKKLHEVGSITAICFTCFLIRCV 158
Query: 241 MMCFDAFDKAADLDVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 297
M AFD LDVLDHPIL+ +YY+LVE+LPS+LVL+ILRKLPP+R QYH I
Sbjct: 159 MGFLSAFDSDTSLDVLDHPILDLVYYMLVEVLPSALVLYILRKLPPRRISAQYHAIH 215
>Medtr2g022880.2 | tobamovirus multiplication-like protein | HC |
chr2:7962718-7966725 | 20130731
Length = 252
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 133/212 (62%), Gaps = 5/212 (2%)
Query: 31 RDINNSPLWQDRIFHVLAVLYGIVAAIALVQLVRIQLRVPEYGWTTQKVFHFLNXXXXXX 90
RD +SPL F+ L + +++ IAL+QL+RI+LRVPEYGWTTQK+FH N
Sbjct: 23 RDSTHSPL-----FYTLCASFSLISFIALIQLIRIELRVPEYGWTTQKIFHLFNFIVSGV 77
Query: 91 XXXXXXXXXXXQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPS 150
L P+++ +LLD+P L FF+TY LLVLFWAEIY+QAR++ TD LR
Sbjct: 78 RALVFGFHAQVFFLHPKVLTLVLLDLPGLVFFSTYTLLVLFWAEIYHQARSLPTDKLRII 137
Query: 151 FYTINAVVYVVQIVLWLILWWKPISVLVILSKMFFAGVSXXXXXXXXXXXXXXXXXXQRF 210
+ ++N VY++Q+ W+ LW V+ + K+F AGVS +RF
Sbjct: 138 YISVNGAVYLIQVGFWIYLWLDYNDVVDFIGKIFIAGVSFVAAIGFLIFGGRLFFMLKRF 197
Query: 211 PVESKGRRKKLQEVGYVTTICFSCFLIRCVMM 242
P+ESKGRRKKLQEVG+VT ICF+CFLIR VM+
Sbjct: 198 PIESKGRRKKLQEVGFVTIICFTCFLIRSVMV 229