Miyakogusa Predicted Gene

Lj4g3v0153720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0153720.1 Non Characterized Hit- tr|G7JJ68|G7JJ68_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,90.91,2e-17,seg,NULL,CUFF.46551.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g132090.1 | hypothetical protein | HC | chr4:55176944-5517...   127   9e-30
Medtr4g132080.1 | transmembrane protein, putative | HC | chr4:55...    94   1e-19

>Medtr4g132090.1 | hypothetical protein | HC |
           chr4:55176944-55177804 | 20130731
          Length = 192

 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 105/181 (58%), Gaps = 33/181 (18%)

Query: 64  RTDEDAEGDELFLPYPITFNHDTHEPQSLTKRTLPTKSRGRKHDKAIIKSHHNXXXXXXX 123
           RTDEDAEG++LF+ +PI  N+  HE QS T +TLP KSRGRK+                 
Sbjct: 25  RTDEDAEGEDLFIQHPIACNNGIHELQSSTNKTLPAKSRGRKN-------------APQQ 71

Query: 124 XXXXXXXXXXXFGLTGYSSAHTYVMA-AFHSVPSQSSQNI--HMPNP------------- 167
                      FGLTGYSSA TY M  +F+S+ S+ SQN   HMPNP             
Sbjct: 72  PTPMSSASTTQFGLTGYSSAPTYTMTPSFYSIQSKISQNTYSHMPNPTHTLYSTNVSGNH 131

Query: 168 SSYPMLPPQPSSA--FVPVMYWPPPNAFLHGP--YPSTYACQSFPSTANYTSIQTQPYYN 223
           SSY MLPPQP++A  F+PVMYWPPP    + P  YPS +  QSFPST +Y S QT+PYY 
Sbjct: 132 SSYQMLPPQPAAASTFLPVMYWPPPPPTAYFPRYYPSAFGYQSFPSTESYMSFQTRPYYY 191

Query: 224 N 224
           N
Sbjct: 192 N 192


>Medtr4g132080.1 | transmembrane protein, putative | HC |
           chr4:55174770-55176717 | 20130731
          Length = 421

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 43/44 (97%)

Query: 1   MGRNKLKSFGPLMCRMAMLVHIRSGSFFFKALGITLLFMAGFPD 44
           MGRNKLKSFGPLMC+MAMLVH+RSGSFFFKALGITLLFMAGF +
Sbjct: 372 MGRNKLKSFGPLMCQMAMLVHVRSGSFFFKALGITLLFMAGFKE 415