Miyakogusa Predicted Gene

Lj4g3v0153710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0153710.1 Non Characterized Hit- tr|K4BFD8|K4BFD8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,35.44,0.0006,seg,NULL,CUFF.46550.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g132090.1 | hypothetical protein | HC | chr4:55176944-5517...    98   5e-21

>Medtr4g132090.1 | hypothetical protein | HC |
           chr4:55176944-55177804 | 20130731
          Length = 192

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 88/165 (53%), Gaps = 33/165 (20%)

Query: 14  VLLKQDTHEPQSLTKRTLPTKSRGRKHDKAIIKSHHNXXXXXXXXXXXXXXXXXXFGLTG 73
           +      HE QS T +TLP KSRGRK+                            FGLTG
Sbjct: 41  IACNNGIHELQSSTNKTLPAKSRGRKN-------------APQQPTPMSSASTTQFGLTG 87

Query: 74  YSSAHTYVMA-AFHSVPSQSSQNI--HMPNP-------------SSYPMLPPQPSSA--F 115
           YSSA TY M  +F+S+ S+ SQN   HMPNP             SSY MLPPQP++A  F
Sbjct: 88  YSSAPTYTMTPSFYSIQSKISQNTYSHMPNPTHTLYSTNVSGNHSSYQMLPPQPAAASTF 147

Query: 116 VPVMYWPPPNAFLHGP--YPSTYACQSFPSTANYTSIQTQPYYNN 158
           +PVMYWPPP    + P  YPS +  QSFPST +Y S QT+PYY N
Sbjct: 148 LPVMYWPPPPPTAYFPRYYPSAFGYQSFPSTESYMSFQTRPYYYN 192