Miyakogusa Predicted Gene

Lj4g3v0151620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151620.1 tr|Q5QNL2|Q5QNL2_ORYSJ DNA polymerase delta p66
subunit-like OS=Oryza sativa subsp. japonica
GN=P045,38.14,7e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.46540.1
         (283 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g075820.1 | DNA polymerase subunit Cdc27 | HC | chr2:31720...   296   1e-80
Medtr2g075820.2 | DNA polymerase subunit Cdc27 | HC | chr2:31720...   290   1e-78

>Medtr2g075820.1 | DNA polymerase subunit Cdc27 | HC |
           chr2:31720156-31725437 | 20130731
          Length = 527

 Score =  296 bits (758), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/283 (55%), Positives = 183/283 (64%), Gaps = 1/283 (0%)

Query: 1   MGSTKSNIVHQPPKHIPHDSIFNVDLKPQNVVKDVKSLNNGIGNTEAEDYANKTTPDKGR 60
           +G TKSN+VHQPPK+I H+SI  VDLK QNVVKDVKS +NG GN    D  NK   +K +
Sbjct: 171 LGPTKSNVVHQPPKNIAHNSIAKVDLKTQNVVKDVKSESNGTGNAGVHDNINKPIAEKEK 230

Query: 61  ALPLPTDKNIVQSNKNGPVTGGSLASFWGRASAKSKPCSPPAENSSTVSNPSEATEVAQT 120
           +LPLP  K   Q++K+G V GGSLASFWGR SAK KPC+ P ENS+ +S P+E  E  QT
Sbjct: 231 SLPLPAGKKKGQADKSGSVNGGSLASFWGRPSAKPKPCAVPEENSNMISKPAEVVENGQT 290

Query: 121 CAHEVRXXXXXXXXXXXIAXXXXXXXXXXVVLDFSDEDEDVISLASPDFPYXXXXXXXXX 180
           CAHE             +A          VV DFSDEDEDVISLASP+ P          
Sbjct: 291 CAHEAVLGDSDDDDNQSVALRRSSNRKRKVVFDFSDEDEDVISLASPEVPSKLSSKDSKQ 350

Query: 181 XXXXXXEKPTLNFDLEIENKSRVKEERVTQQKAHQPHRGDSSVISKCTNTGRXXXXXXXX 240
                 EK  LNFDL +E K  VKEERVT++K  QP + D SVISKCT+TG+        
Sbjct: 351 NDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPK-DLSVISKCTSTGKSSTEKLQS 409

Query: 241 XXXEICVNKDSIKNATPGSPKRKKVMKTRIDERGREVTEVVWE 283
              EICVNKDS K  +PGSPKR+KVMKTRIDERGREVTEVVWE
Sbjct: 410 SAPEICVNKDSAKKVSPGSPKRRKVMKTRIDERGREVTEVVWE 452


>Medtr2g075820.2 | DNA polymerase subunit Cdc27 | HC |
           chr2:31720156-31725437 | 20130731
          Length = 526

 Score =  290 bits (742), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/283 (55%), Positives = 182/283 (64%), Gaps = 2/283 (0%)

Query: 1   MGSTKSNIVHQPPKHIPHDSIFNVDLKPQNVVKDVKSLNNGIGNTEAEDYANKTTPDKGR 60
           +G TKSN+VHQPPK+I H+SI  VDLK QNVVKDVKS +NG GN    D  NK   +K +
Sbjct: 171 LGPTKSNVVHQPPKNIAHNSIAKVDLKTQNVVKDVKSESNGTGNAGVHDNINKPIAEKEK 230

Query: 61  ALPLPTDKNIVQSNKNGPVTGGSLASFWGRASAKSKPCSPPAENSSTVSNPSEATEVAQT 120
           +LPLP  K   Q++K+G V GGSLASFWGR SAK KPC+ P ENS+ +S P+   E  QT
Sbjct: 231 SLPLPAGKKKGQADKSGSVNGGSLASFWGRPSAKPKPCAVPEENSNMISKPA-VVENGQT 289

Query: 121 CAHEVRXXXXXXXXXXXIAXXXXXXXXXXVVLDFSDEDEDVISLASPDFPYXXXXXXXXX 180
           CAHE             +A          VV DFSDEDEDVISLASP+ P          
Sbjct: 290 CAHEAVLGDSDDDDNQSVALRRSSNRKRKVVFDFSDEDEDVISLASPEVPSKLSSKDSKQ 349

Query: 181 XXXXXXEKPTLNFDLEIENKSRVKEERVTQQKAHQPHRGDSSVISKCTNTGRXXXXXXXX 240
                 EK  LNFDL +E K  VKEERVT++K  QP + D SVISKCT+TG+        
Sbjct: 350 NDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPK-DLSVISKCTSTGKSSTEKLQS 408

Query: 241 XXXEICVNKDSIKNATPGSPKRKKVMKTRIDERGREVTEVVWE 283
              EICVNKDS K  +PGSPKR+KVMKTRIDERGREVTEVVWE
Sbjct: 409 SAPEICVNKDSAKKVSPGSPKRRKVMKTRIDERGREVTEVVWE 451