Miyakogusa Predicted Gene
- Lj4g3v0151580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0151580.1 Non Characterized Hit- tr|J3MR14|J3MR14_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G1,30.54,0.0000001,CBM_25,Carbohydrate binding module family
25; Carbohydrate binding domain,Carbohydrate binding
modul,CUFF.46536.1
(219 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g023320.1 | soluble starch synthase III-1 | HC | chr2:8219... 240 9e-64
Medtr2g023320.2 | soluble starch synthase III-1 | HC | chr2:8219... 239 2e-63
>Medtr2g023320.1 | soluble starch synthase III-1 | HC |
chr2:8219703-8232653 | 20130731
Length = 1109
Score = 240 bits (612), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 145/216 (67%), Gaps = 1/216 (0%)
Query: 1 MDALSFEDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSLARVETERKR 60
MDAL+FE+F DR AR+E ER++
Sbjct: 311 MDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARLEVERRQ 370
Query: 61 DKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIHGGHNKWKDG 120
+ + QL+ AVK D+VWYIE GEF GKD VRLYYN SSGPL ++KE+WIHGG+N WKDG
Sbjct: 371 ETVLQLMKNAVKSNDSVWYIEPGEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGYNNWKDG 430
Query: 121 LTIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNNHSEDFHAIVTK 180
L+IVERLVKSG K WW+ADVV+P QALVLDWVFADGPP NA+VYDNNH DFHAIV
Sbjct: 431 LSIVERLVKSGLKGGAWWYADVVVPDQALVLDWVFADGPPQNAAVYDNNHKLDFHAIVPL 490
Query: 181 AT-DKEYWTREEQLIYRKLQEHRRLREKAMREKVVK 215
AT D +YW EEQLIY+KL+E R+LRE+A+R K K
Sbjct: 491 ATPDAQYWVEEEQLIYQKLREERKLREEAIRVKAEK 526
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 91 VRLYYNRSSGPLSNSKEVWIHGGHNKWK-DGLTIVERLVKSGSKDADWWHADVVLPYQAL 149
+ ++ N++ L + +++ I G N W+ TI RL K+ KD +WW + +P +A
Sbjct: 226 IEVFLNKNLSTLRDEEDILILGAFNDWRWKSFTI--RLNKTDLKD-NWWSCQLYVPIEAY 282
Query: 150 VLDWVFADGPPHNASVYDNNHSEDFHAIVTKATDKEYWTREEQLIYRKLQEHRRL 204
LD+VF +G SVYDNN +DF V D + EE L+ K +E +L
Sbjct: 283 KLDFVFFNG----QSVYDNNDQKDFCITVDGGMDALAF--EEFLLEEKRKELEKL 331
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 52 ARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIH 111
AR++ E K L+ L ++ + E + +V ++YN S+ L+ EVW
Sbjct: 528 ARMKAETKEKTLKSFLLS----QKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFR 583
Query: 112 GGHNKW--KDGLTIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNN 169
G N+W ++G +R++ +++ V +P A ++D+VF++ N V+DN
Sbjct: 584 GSFNRWSHRNGPFPPQRMLP--AENGTHVKTSVKVPLDAYMMDFVFSES--ENGGVFDNK 639
Query: 170 HSEDFHAIVTKATDKE 185
D+H V + KE
Sbjct: 640 FGMDYHIPVFGSIVKE 655
>Medtr2g023320.2 | soluble starch synthase III-1 | HC |
chr2:8219703-8232653 | 20130731
Length = 925
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 145/216 (67%), Gaps = 1/216 (0%)
Query: 1 MDALSFEDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSLARVETERKR 60
MDAL+FE+F DR AR+E ER++
Sbjct: 127 MDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARLEVERRQ 186
Query: 61 DKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIHGGHNKWKDG 120
+ + QL+ AVK D+VWYIE GEF GKD VRLYYN SSGPL ++KE+WIHGG+N WKDG
Sbjct: 187 ETVLQLMKNAVKSNDSVWYIEPGEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGYNNWKDG 246
Query: 121 LTIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNNHSEDFHAIVTK 180
L+IVERLVKSG K WW+ADVV+P QALVLDWVFADGPP NA+VYDNNH DFHAIV
Sbjct: 247 LSIVERLVKSGLKGGAWWYADVVVPDQALVLDWVFADGPPQNAAVYDNNHKLDFHAIVPL 306
Query: 181 AT-DKEYWTREEQLIYRKLQEHRRLREKAMREKVVK 215
AT D +YW EEQLIY+KL+E R+LRE+A+R K K
Sbjct: 307 ATPDAQYWVEEEQLIYQKLREERKLREEAIRVKAEK 342
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 91 VRLYYNRSSGPLSNSKEVWIHGGHNKWK-DGLTIVERLVKSGSKDADWWHADVVLPYQAL 149
+ ++ N++ L + +++ I G N W+ TI RL K+ KD +WW + +P +A
Sbjct: 42 IEVFLNKNLSTLRDEEDILILGAFNDWRWKSFTI--RLNKTDLKD-NWWSCQLYVPIEAY 98
Query: 150 VLDWVFADGPPHNASVYDNNHSEDFHAIVTKATDKEYWTREEQLIYRKLQEHRRL 204
LD+VF +G SVYDNN +DF V D + EE L+ K +E +L
Sbjct: 99 KLDFVFFNG----QSVYDNNDQKDFCITVDGGMDALAF--EEFLLEEKRKELEKL 147
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 52 ARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIH 111
AR++ E K L+ L ++ + E + +V ++YN S+ L+ EVW
Sbjct: 344 ARMKAETKEKTLKSFLLS----QKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFR 399
Query: 112 GGHNKW--KDGLTIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNN 169
G N+W ++G +R++ +++ V +P A ++D+VF++ N V+DN
Sbjct: 400 GSFNRWSHRNGPFPPQRMLP--AENGTHVKTSVKVPLDAYMMDFVFSES--ENGGVFDNK 455
Query: 170 HSEDFHAIVTKATDKE 185
D+H V + KE
Sbjct: 456 FGMDYHIPVFGSIVKE 471