Miyakogusa Predicted Gene

Lj4g3v0133570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0133570.1 Non Characterized Hit- tr|D7L0V3|D7L0V3_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42,0.000000003,seg,NULL; PHOSPHATASE-RELATED,NULL; UBX DOMAIN
CONTAINING PROTEIN,NULL; UBX,UBX; SEP,SEP domain; NSF,CUFF.46498.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g024420.1 | UBA and UBX domain plant protein | HC | chr2:8...   444   e-125
Medtr5g085870.1 | UBA and UBX domain plant protein | HC | chr5:3...   325   5e-89

>Medtr2g024420.1 | UBA and UBX domain plant protein | HC |
           chr2:8816758-8821254 | 20130731
          Length = 303

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/294 (75%), Positives = 239/294 (81%), Gaps = 3/294 (1%)

Query: 15  TSRADRIRTLSDLNRPXXXXXXXXXXPQEYYTGGEKSGMLVQDPSKGTDVDAIFNQARQL 74
           +SRA RIRTLSDLNRP          PQEYYTGGEKSGMLVQDPSKG DVDAIFNQARQL
Sbjct: 11  SSRAGRIRTLSDLNRPSADSDSDSDGPQEYYTGGEKSGMLVQDPSKGNDVDAIFNQARQL 70

Query: 75  GAIERPIDQLQEPPRSTSFTGTGRLLSGESIQSAP--QQPESVVHNIVFWTNGFTVNDGP 132
           GA+ERP+DQLQEPPRSTSFTGTGRLLSG+++ +A   QQPESVVHNIVFW+NGFTVNDGP
Sbjct: 71  GAVERPLDQLQEPPRSTSFTGTGRLLSGDTVPTASNSQQPESVVHNIVFWSNGFTVNDGP 130

Query: 133 LRSLDDPENASFLESIKKSECPKELEPADRRSSVNVNLIRRNEKYHEPEKPHVPFQGVGR 192
           LR LDDP NASFLESIKKSECPKELEPADRRS+VNVNLIRRNE Y EPE+    FQGVGR
Sbjct: 131 LRRLDDPANASFLESIKKSECPKELEPADRRSAVNVNLIRRNENYREPERSQASFQGVGR 190

Query: 193 TLGXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVVDQSLPSTQIQLRLADGTRLISNFNYH 252
           TLG                          AGLVVDQSLPST IQLRLADGTRLIS FN+H
Sbjct: 191 TLG-SSSASMEPETNVASTTPPTSAPTPSAGLVVDQSLPSTSIQLRLADGTRLISQFNHH 249

Query: 253 HTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 306
           HT+ DIRAFIDASRP G +NYQLQ+MGFPPK+L+DETQTIEQAGLANSVVIQKF
Sbjct: 250 HTIGDIRAFIDASRPGGRQNYQLQMMGFPPKVLADETQTIEQAGLANSVVIQKF 303


>Medtr5g085870.1 | UBA and UBX domain plant protein | HC |
           chr5:37113793-37109706 | 20130731
          Length = 405

 Score =  325 bits (832), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 173/294 (58%), Positives = 203/294 (69%), Gaps = 9/294 (3%)

Query: 16  SRADRIRTLSDLNRPXXXXXXXXXXPQEYYTGGEKSGMLVQDPSKGTD-VDAIFNQARQL 74
           SR   IRTL D+ R           PQEYY GG+KSGMLVQDP++G + VD IF+QA+Q+
Sbjct: 116 SRQSGIRTLRDVKR-DQDSDSESDEPQEYYAGGQKSGMLVQDPTRGGNSVDDIFDQAKQV 174

Query: 75  GAIERPIDQLQEPPRSTSFTGTGRLLSGESIQSAPQQPESVVHNIVFWTNGFTVNDGPLR 134
            A+E P +      RS SFTGT RLLSGE++ SAPQ  ESV H + FW NGF+VNDGPLR
Sbjct: 175 -AVEPPAENSS---RSRSFTGTARLLSGEAVPSAPQPVESVTHVVTFWRNGFSVNDGPLR 230

Query: 135 SLDDPENASFLESIKKSECPKELEPADRRSSVNVNLIRRNEKYHEPEKP-HVPFQGVGRT 193
            L+DP+NA FLESIKKSECPKELEP DRR+SV ++L RR+E Y EP KP +  F+GVGRT
Sbjct: 231 RLEDPQNAEFLESIKKSECPKELEPTDRRTSVRLSLTRRDENYPEPVKPRNTAFRGVGRT 290

Query: 194 LGXXXXXXXXXX--XXXXXXXXXXXXXXXXAGLVVDQSLPSTQIQLRLADGTRLISNFNY 251
           LG                             GLVVD S P T IQLRL+DGTR++S FN+
Sbjct: 291 LGDSSSNGEAASGPSQTTADASPLTAPAPAMGLVVDDSKPVTSIQLRLSDGTRMVSRFNH 350

Query: 252 HHTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQK 305
           HH + DIRAFIDASRP G R+YQLQ MGFPPK L+D  QTIEQAG+ANSVVIQK
Sbjct: 351 HHAIRDIRAFIDASRPGGTRSYQLQTMGFPPKQLTDLDQTIEQAGIANSVVIQK 404