Miyakogusa Predicted Gene

Lj4g3v0132500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0132500.1 Non Characterized Hit- tr|D7ME59|D7ME59_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,45.03,0.000000000000008,seg,NULL,CUFF.46495.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g132760.1 | zinc finger, C3HC4 type (RING finger) protein ...   154   2e-38
Medtr2g025080.1 | RING/U-box protein, putative | HC | chr2:89019...    87   4e-18

>Medtr4g132760.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr4:55517695-55518940 | 20130731
          Length = 217

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 103/154 (66%), Gaps = 6/154 (3%)

Query: 1   MSQLGLILQESLRNEREARTIFGLLTEQIDAGDTAHXXXXXXXXXXXFTGMGCCGATWVF 60
           MSQLGLILQESLR++RE+RTI GLLTEQ+DA D+             FTGMGCCGATWVF
Sbjct: 1   MSQLGLILQESLRSQRESRTILGLLTEQMDALDSGTTRRRSLKERFRFTGMGCCGATWVF 60

Query: 61  RPVRQDHHEEARGEEGTRTVXXXXXXXXXXXXXDPDPLVPECVGP-GPSGTGMNLAAALA 119
           RP+ +  H   R EEG  TV             DP+P+ PEC  P G SG+GMNLAAALA
Sbjct: 61  RPIIRHEHHHQRNEEGEATV--EQQQQLQVQDQDPNPVEPECEAPAGSSGSGMNLAAALA 118

Query: 120 AERQFRGSGES---EGETPLRVSLMRLLEETEVE 150
           AERQ R S E+   EG TP RVSLM+LLEETE E
Sbjct: 119 AERQMRVSEEASGGEGATPWRVSLMKLLEETEGE 152


>Medtr2g025080.1 | RING/U-box protein, putative | HC |
           chr2:8901978-8903156 | 20130731
          Length = 190

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 79/155 (50%), Gaps = 20/155 (12%)

Query: 1   MSQLGLILQESLRNEREARTIFGLLTEQIDAGDTAHXXXXXXXXXXXFTGMGCCGATWVF 60
           MSQLGL+LQE ++++ E+ TI GLL EQ+D  D              F  +GCCGA W F
Sbjct: 1   MSQLGLLLQEPVQSQTESTTILGLLREQMDGVDGVPRRRRSFKERLGF--IGCCGANWGF 58

Query: 61  RPVRQDHHEEARGEEGTRTVXXXXXXXXXXXXXDPDPLVPECVGPGPSGTGMNLAAALAA 120
           R       ++ +                     DP+  V   +  G S + MNLAAALAA
Sbjct: 59  RSSSSSDSQQNQQR-----------ILDTDPSEDPNMCVAPVIQTGSSSSSMNLAAALAA 107

Query: 121 ERQFRG-SGESEG------ETPLRVSLMRLLEETE 148
           ERQ RG + E+ G       TP RVSLMRLLEETE
Sbjct: 108 ERQLRGPAAETSGGGGRMPGTPWRVSLMRLLEETE 142