Miyakogusa Predicted Gene

Lj4g3v0073690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0073690.1 Non Characterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.79,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING
FACTOR),,NODE_47381_length_996_cov_13.278112.path1.1
         (308 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089380.1 | damaged DNA-binding protein 1A | HC | chr8:371...   474   e-134
Medtr6g461810.1 | cleavage and polyadenylation specificity facto...    53   4e-07
Medtr1g115525.1 | splicing factor 3B subunit-like protein | HC |...    52   6e-07

>Medtr8g089380.1 | damaged DNA-binding protein 1A | HC |
           chr8:37153843-37142364 | 20130731
          Length = 1089

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 251/308 (81%), Gaps = 9/308 (2%)

Query: 1   MSEWNYVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXX 60
           MS WNYVVTAHKPT VTHSCVGNFT PQD NLI+AKCTR+EIH                 
Sbjct: 1   MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLILAKCTRIEIHLLTAQGLQSIL------ 54

Query: 61  XDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIGR 120
            DVP+YGRIA L+LFRPHGE Q+ LF+ TE+YKFCVLQWD E  +LVTR+MGDV DRIGR
Sbjct: 55  -DVPLYGRIATLELFRPHGETQDFLFIATERYKFCVLQWDTEKSELVTRSMGDVSDRIGR 113

Query: 121 PTDNGQIGIVDPDCRLIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFLYGCS 180
           PTDNGQIGI+DPDCRLIGL LYDGLFKVIPFD+ GQLKEAFNI+L+EL VLDIKFLYGC 
Sbjct: 114 PTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCP 173

Query: 181 KPTIVVLYQDNKNARHVKTYEVDLQDKNFVGGPWSQNNLDNGANLLIPVPPPLCGVLIIG 240
           KPTIVVLYQDNK+ARHVKTYEV L+DK+FV GPWSQN+LDNGA+LLIPVPPPLCGVLIIG
Sbjct: 174 KPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIG 233

Query: 241 EETIVYCSATAFKAIPIKLGPSLTKAYGRVDSDGSRYXXXXXXXXXXXXXXXHEKEKVTG 300
           EETIVYCSA  FKAIPI+   ++TKAYGRVD DGSRY               HEKEKVTG
Sbjct: 234 EETIVYCSANGFKAIPIR--AAITKAYGRVDPDGSRYLLGDHTGLLSLLVITHEKEKVTG 291

Query: 301 LKIEPLGE 308
           LKIEPLGE
Sbjct: 292 LKIEPLGE 299


>Medtr6g461810.1 | cleavage and polyadenylation specificity factor
           subunit 1 | HC | chr6:21540099-21517843 | 20130731
          Length = 1448

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 82  QECLFVVTEKYKFCVLQWDRETHQLVTRAM----GDVYDRIGRPTDN---GQIGIVDPDC 134
           ++ + +  +  K  VL++D   H L T ++    G  +  + R  +    G +  VDP  
Sbjct: 127 RDSVILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVAKVDPQG 186

Query: 135 RLIGLRLYDGLFKVIPFDHNG------------------QLKEAFNIKLQELD---VLDI 173
           R  G+ +YD    ++     G                  ++  ++ I L++LD   V D 
Sbjct: 187 RCGGVLVYDLQMIILKTSQAGSGLVGEDDVSGSGGAVAARVDSSYLINLRDLDMRHVKDF 246

Query: 174 KFLYGCSKPTIVVLYQDNKN-------ARHVKTYEVDLQDKNFVGGP--WSQNNLDNGAN 224
            FL+G  +P +V+L++             H  T             P  WS  NL + A 
Sbjct: 247 TFLHGYIEPVMVILHEHELTWAGRVSWKHHTCTISALSISTTLKQHPLIWSAINLPHDAY 306

Query: 225 LLIPVPPPLCGVLIIGEETIVYCSATAFKAIPI 257
            L+ VP P+ GVL+IG  TI Y S +A  A+ +
Sbjct: 307 KLLAVPSPIGGVLVIGANTIHYHSQSASCALSL 339


>Medtr1g115525.1 | splicing factor 3B subunit-like protein | HC |
           chr1:52208212-52213176 | 20130731
          Length = 1190

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 31/263 (11%)

Query: 6   YVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXXXDVPI 65
           Y +T  +PT +  +  GNF+G + + ++VA+   L++                    V +
Sbjct: 4   YNLTLQRPTGIICAINGNFSGGKGQEIVVARGKTLDL------LRPDDNGRIQTILSVEV 57

Query: 66  YGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG-RPTDN 124
           +G I  L  FR  G  ++ + V ++  +  +L +++E + +  +   + + + G R    
Sbjct: 58  FGSIRSLAQFRLTGAQKDFIVVGSDSGRIVILDYNKEKN-VFDKIHQETFGKSGCRRIVP 116

Query: 125 GQIGIVDPDCR--LIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFL---YGC 179
           G+   VDP  R  +IG      L  V+  D   +L  +  ++  +   L         G 
Sbjct: 117 GEYIAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVFSICGVDCGF 176

Query: 180 SKPTIVVLYQDNKNA-------------RHVKTYEVDLQDKNFVGGPWSQNNLDNGANLL 226
             P    +  D   A             +++  YE+DL   N V   WS + +DNGANLL
Sbjct: 177 ENPIFAAIELDYSEADNDSSGMAAAEAQKNLTFYELDL-GLNHVSRKWS-DQVDNGANLL 234

Query: 227 IPVPPPL---CGVLIIGEETIVY 246
           + VP       GVL+  E  ++Y
Sbjct: 235 VTVPGGADGPSGVLVCAENFVIY 257