Miyakogusa Predicted Gene

Lj4g3v0073480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0073480.1 Non Characterized Hit- tr|A5B095|A5B095_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,85.45,1e-18,Vps53_N,Vps53-like,
N-terminal,gene.Ljchr4_pseudomol_20120830.path1.gene105.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g028270.1 | vacuolar sorting-associated-like protein | HC ...   133   4e-32
Medtr2g028270.2 | vacuolar sorting-associated-like protein | HC ...   133   5e-32

>Medtr2g028270.1 | vacuolar sorting-associated-like protein | HC |
           chr2:10426065-10439315 | 20130731
          Length = 819

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 81/129 (62%), Gaps = 44/129 (34%)

Query: 1   MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATCAV-ELTYH 59
           MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAAT AV EL Y 
Sbjct: 13  MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATRAVEELMYK 72

Query: 60  -------------------------------------------MAVSAVEQLQVMASKRQ 76
                                                      M VSAVEQLQVMASKRQ
Sbjct: 73  IREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 132

Query: 77  YKEAAAQLE 85
           YKEAAAQLE
Sbjct: 133 YKEAAAQLE 141


>Medtr2g028270.2 | vacuolar sorting-associated-like protein | HC |
           chr2:10426065-10439315 | 20130731
          Length = 773

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 81/129 (62%), Gaps = 44/129 (34%)

Query: 1   MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATCAV-ELTYH 59
           MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAAT AV EL Y 
Sbjct: 13  MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATRAVEELMYK 72

Query: 60  -------------------------------------------MAVSAVEQLQVMASKRQ 76
                                                      M VSAVEQLQVMASKRQ
Sbjct: 73  IREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 132

Query: 77  YKEAAAQLE 85
           YKEAAAQLE
Sbjct: 133 YKEAAAQLE 141