Miyakogusa Predicted Gene

Lj4g3v0070870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0070870.1 Non Characterized Hit- tr|I1LVC4|I1LVC4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26386 PE,65.43,1e-18,
,NODE_73797_length_276_cov_35.985508.path2.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g437480.1 | chromatin remodeling complex subunit | HC | ch...    77   5e-15
Medtr8g037345.1 | chromatin remodeling complex subunit | HC | ch...    62   1e-10

>Medtr2g437480.1 | chromatin remodeling complex subunit | HC |
          chr2:14725811-14732214 | 20130731
          Length = 1042

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 9/68 (13%)

Query: 11 KRPAPSGISPQ-GHKRLKLSSDSLPYSAHDKAVPETPTNVEDFSNPFAISDFLNRLESGK 69
          KRPAP+GI P+ G K+LKLSSDSLP   H   V        D+S+P+AIS+ +NRLESGK
Sbjct: 6  KRPAPTGILPEEGRKKLKLSSDSLPCLTHGDVV--------DYSSPYAISNVINRLESGK 57

Query: 70 FGSVTKDI 77
          FGSVTK+I
Sbjct: 58 FGSVTKNI 65


>Medtr8g037345.1 | chromatin remodeling complex subunit | HC |
          chr8:13958611-13951546 | 20130731
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 8/59 (13%)

Query: 19 SPQGHKRLKLSSDSLPYSAHDKAVPETPTNVEDFSNPFAISDFLNRLESGKFGSVTKDI 77
          S +G K+LKLSSD LP S   K V        D+SNP+AI++ LN LE G++GSVTKDI
Sbjct: 21 SEEGCKKLKLSSDGLPCSVQAKVV--------DYSNPYAITEVLNSLEGGEYGSVTKDI 71