Miyakogusa Predicted Gene

Lj4g3v0070850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0070850.1 Non Characterized Hit- tr|I1M0W6|I1M0W6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,41.58,0.00000001, ,NODE_52564_length_383_cov_39.913837.path1.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g037345.1 | chromatin remodeling complex subunit | HC | ch...   106   4e-24
Medtr2g437480.1 | chromatin remodeling complex subunit | HC | ch...    84   3e-17

>Medtr8g037345.1 | chromatin remodeling complex subunit | HC |
           chr8:13958611-13951546 | 20130731
          Length = 929

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 84/130 (64%), Gaps = 21/130 (16%)

Query: 1   MQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENEKGTVMSHDEVIDLEEERTKKDASA- 59
           MQVLGP+FAK+P L+ + LKVV   DE+S+          S   VIDL+E + ++D +A 
Sbjct: 79  MQVLGPYFAKYPTLIDRFLKVVTVQDEKSHH---------SDQNVIDLDEGQIQRDVAAP 129

Query: 60  --------AQL-VVIIDSDEEDDRDKNSSSLPFNEVMLPNSLQSPALRMMGYRAPIAYHG 110
                   AQ  VVIIDSDEEDDRD+ S    ++EV+LP   QSPAL+M+GY  P AY+G
Sbjct: 130 KREKDVPAAQCPVVIIDSDEEDDRDQKSFH-AYHEVVLPKR-QSPALKMIGYHPPNAYNG 187

Query: 111 ESEDLKFEPT 120
           ES DLKFE +
Sbjct: 188 ESSDLKFETS 197


>Medtr2g437480.1 | chromatin remodeling complex subunit | HC |
           chr2:14725811-14732214 | 20130731
          Length = 1042

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 58/97 (59%), Gaps = 20/97 (20%)

Query: 24  NHDEESNKLENEKGTVMSHDEVIDLEEERTKKDASAAQLVVIIDSDEEDDRDKNSSSLPF 83
           NHDEE+  +ENEK T MS   VI                   IDS+ EDDRD+ +S LPF
Sbjct: 263 NHDEETPNMENEKVTGMSCQNVI-------------------IDSNGEDDRDQ-TSFLPF 302

Query: 84  NEVMLPNSLQSPALRMMGYRAPIAYHGESEDLKFEPT 120
           +EV LP  +QSPAL M+GY  P AYHGE  DLKFE +
Sbjct: 303 HEVALPKPVQSPALEMIGYHDPNAYHGEHADLKFETS 339



 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 9/91 (9%)

Query: 1   MQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENEKGTVMSHDEVIDLEE--ERTKKDAS 58
           MQ+LGP+FAK P+LV Q L+VV +HDEE+  +EN+    + HD VIDL+   E T+KD  
Sbjct: 73  MQILGPYFAKCPRLVNQLLRVVTDHDEETPNMENKNVNGLQHDNVIDLDSDGEHTEKDIL 132

Query: 59  AAQ-------LVVIIDSDEEDDRDKNSSSLP 82
           A +       +  IIDSDEEDD+D    ++P
Sbjct: 133 APKRGYNVTAVPFIIDSDEEDDKDHGHDTVP 163