Miyakogusa Predicted Gene

Lj4g3v0060680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0060680.2 tr|D2VPH7|D2VPH7_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_70864 PE=4
SV=1,29.09,0.000000006,PHOSPHATIDYLCHOLINE TRANSFER PROTEIN,NULL;
START,Lipid-binding START; Bet v1-like,NULL; no descripti,CUFF.46372.2
         (238 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g134400.1 | homeobox/lipid-binding domain protein | HC | c...   450   e-127
Medtr4g134400.2 | homeobox/lipid-binding domain protein | HC | c...   380   e-106
Medtr8g080380.1 | microsomal signal peptidase 12 kDa protein | H...    66   3e-11

>Medtr4g134400.1 | homeobox/lipid-binding domain protein | HC |
           chr4:56282716-56280996 | 20130731
          Length = 258

 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/239 (92%), Positives = 227/239 (94%), Gaps = 2/239 (0%)

Query: 1   MSSRTAPCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRG-SGNDGWKVLTLDNGVE 59
           MS RT PCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRG S ND WKVLT DNGVE
Sbjct: 1   MSRRTVPCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRGNSNNDEWKVLTFDNGVE 60

Query: 60  ISKRRSGSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDIEDNLSIIR 119
           ISKRRSGS HTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIK+IEDNLSIIR
Sbjct: 61  ISKRRSGSFHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKEIEDNLSIIR 120

Query: 120 LRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNAIRGLLLQS 179
           LRFGDNSKPLFRNREFIVYERR+TMEDGT+VVAVASLPKEIAAGLHPKQNN+IRGLLLQS
Sbjct: 121 LRFGDNSKPLFRNREFIVYERRQTMEDGTVVVAVASLPKEIAAGLHPKQNNSIRGLLLQS 180

Query: 180 GWVVDKLEDDSCVVTYVVQLDPAGWLPKCFVNRLNTKLVMIIENLRKLAQTACPVEGEN 238
           GWVV+KLED+SC VTYVVQLDPAGWLPKCFVNR NTKLVMIIENLRKLAQ ACP E EN
Sbjct: 181 GWVVEKLEDNSCAVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLRKLAQ-ACPNEAEN 238


>Medtr4g134400.2 | homeobox/lipid-binding domain protein | HC |
           chr4:56282689-56280996 | 20130731
          Length = 214

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/200 (92%), Positives = 192/200 (96%), Gaps = 1/200 (0%)

Query: 1   MSSRTAPCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRG-SGNDGWKVLTLDNGVE 59
           MS RT PCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRG S ND WKVLT DNGVE
Sbjct: 1   MSRRTVPCSRSWSISEDSLKRYVQFASESCIQELLAASDTNRGNSNNDEWKVLTFDNGVE 60

Query: 60  ISKRRSGSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDIEDNLSIIR 119
           ISKRRSGS HTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIK+IEDNLSIIR
Sbjct: 61  ISKRRSGSFHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKEIEDNLSIIR 120

Query: 120 LRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNAIRGLLLQS 179
           LRFGDNSKPLFRNREFIVYERR+TMEDGT+VVAVASLPKEIAAGLHPKQNN+IRGLLLQS
Sbjct: 121 LRFGDNSKPLFRNREFIVYERRQTMEDGTVVVAVASLPKEIAAGLHPKQNNSIRGLLLQS 180

Query: 180 GWVVDKLEDDSCVVTYVVQL 199
           GWVV+KLED+SC VTYVVQ+
Sbjct: 181 GWVVEKLEDNSCAVTYVVQV 200


>Medtr8g080380.1 | microsomal signal peptidase 12 kDa protein | HC
          | chr8:34572214-34568870 | 20130731
          Length = 184

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 2/46 (4%)

Query: 19 LKRYVQFASESCIQELLAASDTNRGSGNDGWKVLTLDNGVEISKRR 64
          + RYVQFA+E CIQELL A DTNRG+ NDGWK++T++   E SKRR
Sbjct: 1  MGRYVQFATEYCIQELLEAYDTNRGNTNDGWKMVTME--FETSKRR 44