Miyakogusa Predicted Gene

Lj4g3v0060670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0060670.1 Non Characterized Hit- tr|D8SXS7|D8SXS7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,42.86,1e-16,NYN_YacP,Protein of unknown function DUF901;
seg,NULL,CUFF.46371.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g134410.1 | YacP-like NYN domain protein | HC | chr4:56285...   258   1e-69

>Medtr4g134410.1 | YacP-like NYN domain protein | HC |
           chr4:56285094-56292434 | 20130731
          Length = 334

 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 136/156 (87%)

Query: 1   MNGRLHIARQKLIDELITFSMLREVKVVAVFDAMMSGLPTHKENFAGIDVIFSGESSADT 60
           +NG+L +ARQKLIDELITFS+LREVKVV VFDAMMSG P HKE  +GIDV+FS ++SADT
Sbjct: 179 LNGKLELARQKLIDELITFSILREVKVVVVFDAMMSGFPNHKEYSSGIDVVFSADASADT 238

Query: 61  WIEKEVSALKEDGCPKVWVVTSDHCXXXXXXXXXXFVWSCKALVTEIKASQKEVEMMLQE 120
           WIEKEVSALKEDGCPKVWVVTSDHC          FVWS KALVTEIKASQKEVE MLQE
Sbjct: 239 WIEKEVSALKEDGCPKVWVVTSDHCQQQAAHGAGAFVWSSKALVTEIKASQKEVEDMLQE 298

Query: 121 QRSTSFQGRLLKHNLDAEVVDALKDLRQKLSEKELK 156
           QRSTSFQGRLLKHNLDAEVVDALK+LRQKLS+ ELK
Sbjct: 299 QRSTSFQGRLLKHNLDAEVVDALKNLRQKLSDNELK 334