Miyakogusa Predicted Gene
- Lj4g3v0047620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0047620.1 Non Characterized Hit- tr|I1KNQ8|I1KNQ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,76.07,0,dnaX_nterm:
DNA polymerase III, subunit gamma and ,DNA polymerase III, subunit
gamma/ tau; P-loop co,gene.g51442.t1.1
(710 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC | ch... 655 0.0
Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC | ch... 253 6e-67
Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC | ch... 253 7e-67
Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC | ch... 239 6e-63
Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC | ch... 239 6e-63
Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC | ch... 235 1e-61
Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC | ch... 234 3e-61
Medtr3g088120.2 | replication factor C subunit 5 | HC | chr3:399... 66 1e-10
Medtr3g088120.1 | replication factor C subunit 5 | HC | chr3:399... 65 3e-10
Medtr3g088380.1 | replication factor C subunit 2 | HC | chr3:401... 62 2e-09
Medtr3g088380.2 | replication factor C subunit 2 | HC | chr3:401... 62 2e-09
Medtr4g102860.1 | replication factor C subunit 2 | HC | chr4:426... 55 2e-07
>Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:56342192-56348822 | 20130731
Length = 1203
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/505 (72%), Positives = 400/505 (79%), Gaps = 36/505 (7%)
Query: 227 DDTEDYCHSEDVRGVSGASPLLAXXXXXXXXXXXXXXXXXXXXEDSSYSYSTPALSTSSY 286
D +DY +S +SGAS LL +DSSYSYSTPALST+S+
Sbjct: 178 DSGDDYSNS-----ISGASSLL-----RKLNHNNNFLTRTSLKDDSSYSYSTPALSTTSF 227
Query: 287 NRYCGH--RDPSTVGSWDGTTTSMNXXXXXXXXXXX--LPGRQGCGIPCYWSKRT-PKHR 341
NRY R PSTVGS+DGTTTS+N LPGRQGCGIPCYWSKRT PKH
Sbjct: 228 NRYTHRHRRYPSTVGSYDGTTTSVNDGDDEDIDDDRLDLPGRQGCGIPCYWSKRTTPKHS 287
Query: 342 GACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNH--RRSFSA--SNKRRISSRSAQ----- 392
G+C C SPS SDTLRRKGSS+LCG+Q+ Y H R SFSA +KRR+SSR+A+
Sbjct: 288 GSC--C-SPSFSDTLRRKGSSILCGTQSIYSRHYRRSSFSALQPHKRRMSSRNARCARGG 344
Query: 393 GVLPLLTN--SGDVRE-GSSIGTGRS---DDELSTNFGELDLEGLSRLDGRRWSTSCRSQ 446
G++PLLT+ SGDVR SSIG GRS DDELSTNFGELDLEGLSRLDGRRWS+SCRSQ
Sbjct: 345 GIVPLLTSTSSGDVRHCSSSIGIGRSRTDDDELSTNFGELDLEGLSRLDGRRWSSSCRSQ 404
Query: 447 EGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYL 506
EGLEIV LN E E+GS+ +NS SFS KYKP+FFGELIGQ IVV SL+NAVSRGRIAPVYL
Sbjct: 405 EGLEIVPLN-EDEEGSSSENSRSFSHKYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYL 463
Query: 507 FQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGI 566
FQGPRGTGKTSTARIFAAALNCVASDE KPCGYC EC DF+SGKS DLVEVDGTNK+GI
Sbjct: 464 FQGPRGTGKTSTARIFAAALNCVASDE-GKPCGYCGECADFVSGKSCDLVEVDGTNKKGI 522
Query: 567 DKARYLLKRLSIGXXXXXX-RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSD 625
DKARYLLKRL+ G RYTVFV DECHLL SKTWLG LKFLE PPQRVVFIFITSD
Sbjct: 523 DKARYLLKRLAAGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSD 582
Query: 626 LDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAE 685
LDNVPRTIQSRCQKYLFNKIKDGDIV RLRKISTQE+LDVETDALDLIA+NADGSLRDAE
Sbjct: 583 LDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVETDALDLIALNADGSLRDAE 642
Query: 686 TMLEQLSLLGKRITTSLVNELVSLL 710
TMLEQLSLLGKRITTSLVNELV ++
Sbjct: 643 TMLEQLSLLGKRITTSLVNELVGVV 667
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 56/102 (54%), Gaps = 26/102 (25%)
Query: 1 MRVSDPSKLHLKKELTQIRKAARVLRDPGTTXXXXXXXXXXXXVAAWKDSGSTRFTATAN 60
M+++DPS+LHLKKELTQIRKAARVLRDPGTT ++WK + + N
Sbjct: 5 MKMNDPSRLHLKKELTQIRKAARVLRDPGTT-------------SSWKSTSRSTANPFRN 51
Query: 61 PNSQLDSALPPSINDKDK--------RVFLYNWKNYKSSSEK 94
PNS LP S K K VFLYNW NY S K
Sbjct: 52 PNS-----LPTSSKHKHKDNNNNNNNTVFLYNWNNYNKSFNK 88
>Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113918-43109005 | 20130731
Length = 936
Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 163/242 (67%), Gaps = 2/242 (0%)
Query: 469 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 528
S S K++P F +L+GQN+V +SL A+SRGRIA YLF GPRGTGKTS +RIFAAALNC
Sbjct: 279 SLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNC 338
Query: 529 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 588
++ +E +PCG C EC F SG+S D+ EVD DKA+ L+K + RY
Sbjct: 339 ISLEE-RRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKN-ACTTAPFSSRYK 396
Query: 589 VFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDG 648
VF+ DEC LL +TW LL L Q VVF+ IT DL+ +PR+ SR Q+Y F KIKD
Sbjct: 397 VFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDA 456
Query: 649 DIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVS 708
DI RL++I +E L+ E DALD IA + GSLRDAE ML+QLSLLGK+IT SLV EL
Sbjct: 457 DIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
Query: 709 LL 710
++
Sbjct: 517 VI 518
>Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113306-43108849 | 20130731
Length = 935
Score = 253 bits (645), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 163/242 (67%), Gaps = 2/242 (0%)
Query: 469 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 528
S S K++P F +L+GQN+V +SL A+SRGRIA YLF GPRGTGKTS +RIFAAALNC
Sbjct: 279 SLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNC 338
Query: 529 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 588
++ +E +PCG C EC F SG+S D+ EVD DKA+ L+K + RY
Sbjct: 339 ISLEE-RRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKN-ACTTAPFSSRYK 396
Query: 589 VFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDG 648
VF+ DEC LL +TW LL L Q VVF+ IT DL+ +PR+ SR Q+Y F KIKD
Sbjct: 397 VFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDA 456
Query: 649 DIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVS 708
DI RL++I +E L+ E DALD IA + GSLRDAE ML+QLSLLGK+IT SLV EL
Sbjct: 457 DIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
Query: 709 LL 710
++
Sbjct: 517 VI 518
>Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258656-5265014 | 20130731
Length = 1177
Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 159/410 (38%), Positives = 214/410 (52%), Gaps = 59/410 (14%)
Query: 324 RQGCGIPCYWSKRTPKHRGA-----CGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSF 378
+ GCG+P WS+ HRG GR S LSD+ +KG S+
Sbjct: 329 KNGCGMPWNWSR--IHHRGKTFLDIAGRSLSCGLSDSRLKKGRSL--------------- 371
Query: 379 SASNKRRIS------------SRSAQGVLPLLTNSGDVR---EGSSIGTGRSDDELSTNF 423
SN R IS + S LPLL ++ E + G G S
Sbjct: 372 -TSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWGHGYS-------- 422
Query: 424 GELDLEG--LSRLD-GRRWSTSCRSQEGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFG 480
GEL + G L + D ++ RS + N S +QKY P F
Sbjct: 423 GELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSR-------HQSLTQKYIPRTFR 475
Query: 481 ELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGY 540
+++GQN+V Q+L NAVSR ++ +Y+F GP GTGKTS ARIFA ALNC +S E KPCG+
Sbjct: 476 DMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC-SSSEHPKPCGF 534
Query: 541 CRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPS 600
C C GKS ++ EV + + LL + + +Y VF+FD+C L +
Sbjct: 535 CNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPS--QYRVFIFDDCDSLSA 592
Query: 601 KTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQ 660
W + K ++ P+RVVFI +++ LD +P I SRCQK+ F K+KD DIV L I+T+
Sbjct: 593 DCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATK 652
Query: 661 ESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVSLL 710
E LD++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELV L+
Sbjct: 653 EGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 702
>Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258652-5265014 | 20130731
Length = 1177
Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 159/410 (38%), Positives = 214/410 (52%), Gaps = 59/410 (14%)
Query: 324 RQGCGIPCYWSKRTPKHRGA-----CGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSF 378
+ GCG+P WS+ HRG GR S LSD+ +KG S+
Sbjct: 329 KNGCGMPWNWSR--IHHRGKTFLDIAGRSLSCGLSDSRLKKGRSL--------------- 371
Query: 379 SASNKRRIS------------SRSAQGVLPLLTNSGDVR---EGSSIGTGRSDDELSTNF 423
SN R IS + S LPLL ++ E + G G S
Sbjct: 372 -TSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWGHGYS-------- 422
Query: 424 GELDLEG--LSRLD-GRRWSTSCRSQEGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFG 480
GEL + G L + D ++ RS + N S +QKY P F
Sbjct: 423 GELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSR-------HQSLTQKYIPRTFR 475
Query: 481 ELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGY 540
+++GQN+V Q+L NAVSR ++ +Y+F GP GTGKTS ARIFA ALNC +S E KPCG+
Sbjct: 476 DMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC-SSSEHPKPCGF 534
Query: 541 CRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPS 600
C C GKS ++ EV + + LL + + +Y VF+FD+C L +
Sbjct: 535 CNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPS--QYRVFIFDDCDSLSA 592
Query: 601 KTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQ 660
W + K ++ P+RVVFI +++ LD +P I SRCQK+ F K+KD DIV L I+T+
Sbjct: 593 DCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATK 652
Query: 661 ESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVSLL 710
E LD++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELV L+
Sbjct: 653 EGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 702
>Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261613-34257458 | 20130731
Length = 903
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 162/253 (64%), Gaps = 3/253 (1%)
Query: 458 GEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTS 517
GE + S K++P+ F +L+GQ++VV+SL+ A+S RI YLF GPRGTGKTS
Sbjct: 255 GESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTS 314
Query: 518 TARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLS 577
++IFA ALNC+ S++ +PCG CREC F SG+S D+ EVD D+ + L+K +
Sbjct: 315 ASKIFACALNCI-SNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVK--N 371
Query: 578 IGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 637
R+ VF+ DEC LL +TW L + Q VF+ IT+DLD +P++ SR
Sbjct: 372 ACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRA 431
Query: 638 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKR 697
QKY F K++D +I +L KI T+E LD E ALDLIA + GS+RDAE ML+QLSLLGK+
Sbjct: 432 QKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKK 491
Query: 698 ITTSLVNELVSLL 710
I SLV EL ++
Sbjct: 492 IKISLVYELTGIV 504
>Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261100-34257458 | 20130731
Length = 653
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 162/253 (64%), Gaps = 3/253 (1%)
Query: 458 GEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTS 517
GE + S K++P+ F +L+GQ++VV+SL+ A+S RI YLF GPRGTGKTS
Sbjct: 255 GESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTS 314
Query: 518 TARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLS 577
++IFA ALNC+ S++ +PCG CREC F SG+S D+ EVD D+ + L+K +
Sbjct: 315 ASKIFACALNCI-SNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVK--N 371
Query: 578 IGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 637
R+ VF+ DEC LL +TW L + Q VF+ IT+DLD +P++ SR
Sbjct: 372 ACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRA 431
Query: 638 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKR 697
QKY F K++D +I +L KI T+E LD E ALDLIA + GS+RDAE ML+QLSLLGK+
Sbjct: 432 QKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKK 491
Query: 698 ITTSLVNELVSLL 710
I SLV EL ++
Sbjct: 492 IKISLVYELTGIV 504
>Medtr3g088120.2 | replication factor C subunit 5 | HC |
chr3:39964069-39959228 | 20130731
Length = 300
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 472 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 531
+KY+P ++ +V ++ + R+ P L GP GTGKTST I A A +
Sbjct: 36 EKYRPQSLDDVAAHRDIVDTIDRLTTENRL-PHLLLYGPPGTGKTST--ILAVARKLYGA 92
Query: 532 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK------RLSIGXXXXXX 585
N ++E++ ++ RGID R ++ LS G
Sbjct: 93 QYHNM------------------ILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVK 134
Query: 586 RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKI 645
+ + DE + L + +E+ + F I + ++ + +QSRC ++ F +
Sbjct: 135 ---LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPL 191
Query: 646 KDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLV 703
+ RL+ + E LDV+ L + ++G +R A +L+ + ++IT V
Sbjct: 192 DAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAV 249
>Medtr3g088120.1 | replication factor C subunit 5 | HC |
chr3:39964069-39957680 | 20130731
Length = 355
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 472 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 531
+KY+P ++ +V ++ + R+ P L GP GTGKTST I A A +
Sbjct: 36 EKYRPQSLDDVAAHRDIVDTIDRLTTENRL-PHLLLYGPPGTGKTST--ILAVARKLYGA 92
Query: 532 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK------RLSIGXXXXXX 585
N ++E++ ++ RGID R ++ LS G
Sbjct: 93 QYHNM------------------ILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVK 134
Query: 586 RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKI 645
+ + DE + L + +E+ + F I + ++ + +QSRC ++ F +
Sbjct: 135 ---LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPL 191
Query: 646 KDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLV 703
+ RL+ + E LDV+ L + ++G +R A +L+ + ++IT V
Sbjct: 192 DAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAV 249
>Medtr3g088380.1 | replication factor C subunit 2 | HC |
chr3:40162477-40157119 | 20130731
Length = 339
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 472 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 531
+KY+P ++ Q VV+ L N + G P LF GP GTGKT+TA A L
Sbjct: 13 EKYRPKQVKDVAHQEEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTALAIAHQLF---- 67
Query: 532 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK---RLSIGXXXXXX--- 585
P Y S ++E++ ++ RGI+ R +K +++G
Sbjct: 68 ----GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYP 112
Query: 586 --RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 643
Y + V DE + L + +E + F FI + + + + SRC K+ F
Sbjct: 113 CPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172
Query: 644 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGKRITT 700
+ + + R+ I +E + ++ + L ++ + G LR A T L+ + L G I++
Sbjct: 173 PLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISS 230
>Medtr3g088380.2 | replication factor C subunit 2 | HC |
chr3:40162519-40157119 | 20130731
Length = 339
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 472 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 531
+KY+P ++ Q VV+ L N + G P LF GP GTGKT+TA A L
Sbjct: 13 EKYRPKQVKDVAHQEEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTALAIAHQLF---- 67
Query: 532 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK---RLSIGXXXXXX--- 585
P Y S ++E++ ++ RGI+ R +K +++G
Sbjct: 68 ----GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYP 112
Query: 586 --RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 643
Y + V DE + L + +E + F FI + + + + SRC K+ F
Sbjct: 113 CPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172
Query: 644 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGKRITT 700
+ + + R+ I +E + ++ + L ++ + G LR A T L+ + L G I++
Sbjct: 173 PLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISS 230
>Medtr4g102860.1 | replication factor C subunit 2 | HC |
chr4:42642450-42637960 | 20130731
Length = 333
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 24/219 (10%)
Query: 465 DNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAA 524
D W +KY+P +++G V L ++R P + GP GTGKT++ I A
Sbjct: 14 DVPWV--EKYRPSKVVDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTTS--ILAL 68
Query: 525 ALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXX 584
A + + RE ++E++ ++ RGID R +K +
Sbjct: 69 AHELLGPNY--------REA----------VLELNASDDRGIDVVRNKIKMFAQKKVTLP 110
Query: 585 -XRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 643
R+ V + DE + S L + +E F + + IQSRC F+
Sbjct: 111 PGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFS 170
Query: 644 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLR 682
++ D +I+ RL + E + + L+ I ADG +R
Sbjct: 171 RLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMR 209