Miyakogusa Predicted Gene
- Lj4g3v0037530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0037530.1 Non Characterized Hit- tr|I1KNQ8|I1KNQ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.13,0,seg,NULL;
DNA_pol3_delta2,NULL; DNA_pol3_gamma3,DNA polymerase III, gamma
subunit, domain III; dnaX_,CUFF.46552.1
(1250 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC | ch... 1374 0.0
Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC | ch... 373 e-103
Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC | ch... 369 e-102
Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC | ch... 353 7e-97
Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC | ch... 353 7e-97
Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC | ch... 322 1e-87
Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC | ch... 320 5e-87
Medtr3g088380.1 | replication factor C subunit 2 | HC | chr3:401... 69 3e-11
Medtr3g088380.2 | replication factor C subunit 2 | HC | chr3:401... 69 3e-11
Medtr3g088120.2 | replication factor C subunit 5 | HC | chr3:399... 65 4e-10
Medtr3g088120.1 | replication factor C subunit 5 | HC | chr3:399... 64 9e-10
Medtr4g102860.1 | replication factor C subunit 2 | HC | chr4:426... 55 6e-07
>Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:56342192-56348822 | 20130731
Length = 1203
Score = 1374 bits (3556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1055 (72%), Positives = 825/1055 (78%), Gaps = 64/1055 (6%)
Query: 230 DDTEDYCHSEDVRGVSGASPLLAXXXXXXXXXXXXXXXXXXXXEDSSYSYSTPALSTSSY 289
D +DY +S +SGAS LL +DSSYSYSTPALST+S+
Sbjct: 178 DSGDDYSNS-----ISGASSLL-----RKLNHNNNFLTRTSLKDDSSYSYSTPALSTTSF 227
Query: 290 NRYCGH--RDPSTVGSWDGTTTSMNXXXXXXXXXXX--LPGRQGCGIPCYWSKRT-PKHR 344
NRY R PSTVGS+DGTTTS+N LPGRQGCGIPCYWSKRT PKH
Sbjct: 228 NRYTHRHRRYPSTVGSYDGTTTSVNDGDDEDIDDDRLDLPGRQGCGIPCYWSKRTTPKHS 287
Query: 345 GACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNH--RRSFSA--SNKRRISSRSAQ----- 395
G+C C SPS SDTLRRKGSS+LCG+Q+ Y H R SFSA +KRR+SSR+A+
Sbjct: 288 GSC--C-SPSFSDTLRRKGSSILCGTQSIYSRHYRRSSFSALQPHKRRMSSRNARCARGG 344
Query: 396 GVLPLLTN--SGDVRE-GSSIGTGRS---DDELSTNFGELDLEGLSRLDGRRWSTSCRSQ 449
G++PLLT+ SGDVR SSIG GRS DDELSTNFGELDLEGLSRLDGRRWS+SCRSQ
Sbjct: 345 GIVPLLTSTSSGDVRHCSSSIGIGRSRTDDDELSTNFGELDLEGLSRLDGRRWSSSCRSQ 404
Query: 450 EGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYL 509
EGLEIV LN E E+GS+ +NS SFS KYKP+FFGELIGQ IVV SL+NAVSRGRIAPVYL
Sbjct: 405 EGLEIVPLN-EDEEGSSSENSRSFSHKYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYL 463
Query: 510 FQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGI 569
FQGPRGTGKTSTARIFAAALNCVASDE KPCGYC EC DF+SGKS DLVEVDGTNK+GI
Sbjct: 464 FQGPRGTGKTSTARIFAAALNCVASDE-GKPCGYCGECADFVSGKSCDLVEVDGTNKKGI 522
Query: 570 DKARYLLKRLSIGXXXXXX-RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSD 628
DKARYLLKRL+ G RYTVFV DECHLL SKTWLG LKFLE PPQRVVFIFITSD
Sbjct: 523 DKARYLLKRLAAGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSD 582
Query: 629 LDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAE 688
LDNVPRTIQSRCQKYLFNKIKDGDIV RLRKISTQE+LDVETDALDLIA+NADGSLRDAE
Sbjct: 583 LDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVETDALDLIALNADGSLRDAE 642
Query: 689 TMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPM 748
TMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSD AETVKR+RELMDSGVDPM
Sbjct: 643 TMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPM 702
Query: 749 VLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTS 808
VLMSQLAGLIMDIIAGSY VVD KPD S FGGRSLNE+ELERLKNALKLLSEAEKQLRTS
Sbjct: 703 VLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNETELERLKNALKLLSEAEKQLRTS 762
Query: 809 SERTTWFTATLLQLGSIPSPDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQKSDLS-- 866
SER+TWFTATLLQLGS+PS EDDPSSASRD+TSFK K DL
Sbjct: 763 SERSTWFTATLLQLGSVPS-SDVTQSSSSRRQSCKTTEDDPSSASRDITSFKHKLDLQYM 821
Query: 867 ------PASHLKAANGSSVHQKVISSRIDGFIKRPKXXXXXXX---XXXXXXDDLIVGNA 917
PAS+ K+ NGSS Q IDGF K DDLI GN
Sbjct: 822 PQKSTPPASYQKSVNGSSRLQ------IDGFSLNSKPSNSPVIDDGSTVVSSDDLIAGNT 875
Query: 918 MFRCIDSGQLGDIWAHCIERCHSKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLR 977
MFRCIDSG+L DIW+ CIERCHSKTLRQLLH+HGKLVS+ EV+GVL AYVAFGDGDIKLR
Sbjct: 876 MFRCIDSGKLCDIWSCCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDGDIKLR 935
Query: 978 AERFLRSITNSMEMVLRRNVEVRIIHLPD-EGEIQINPPGENQAESKMASAKEQRRGHMN 1036
ERFL SITNS+E+VLRR VEVRII LPD EGE Q+NP G QA S +AS EQRR HMN
Sbjct: 936 VERFLSSITNSLEIVLRRIVEVRIILLPDGEGENQVNPSGLKQATSALASKDEQRRVHMN 995
Query: 1037 GTESYSNLPPVLDGKLQSATSSSDIRAEGNVTRERRQDNPMQRIESIIREQRLETAWLQA 1096
G +YS+LP QSA SSDI EGN +ERR+DNP+QRIESIIREQRLETAWLQA
Sbjct: 996 GAIAYSSLP-------QSAMGSSDIPTEGNGAKERRRDNPVQRIESIIREQRLETAWLQA 1048
Query: 1097 VEKGSPGSLSRLRPEKNQVLPQDGIYCVDPKEPMDSTRFSSHQHWEDDLNNSLKALSIKN 1156
VEKGSPGSLSRLRPEKNQVLPQDG+Y ++P E MDSTRFSSHQH EDD N+ LK L++KN
Sbjct: 1049 VEKGSPGSLSRLRPEKNQVLPQDGVYGINPTESMDSTRFSSHQHREDDTNSDLKILALKN 1108
Query: 1157 GRVLQKDQISKRADHYPMSPSLLHDNSLATISGKDNLGYESSSRPGGCGFLCW-NKSKTK 1215
GRVL KDQI KRAD YPMSPS+LHD+SLA +SGKDNL ES S GGCGFLCW NKSKT+
Sbjct: 1109 GRVLPKDQIGKRADSYPMSPSILHDSSLAILSGKDNLDCESGSGAGGCGFLCWNNKSKTR 1168
Query: 1216 RVVKVKGTPV-RARKAGCLTLFGECGGKTKKKERR 1249
R VKVKGTPV ARK G +LFGECG KK+ +R
Sbjct: 1169 RAVKVKGTPVGGARKVGRFSLFGECGMPKKKESKR 1203
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 59/106 (55%), Gaps = 27/106 (25%)
Query: 1 MSE-MRVSDPSKLHLKKELTQIRKAARVLRDPGTTXXXXXXXXXXXXVAAWKDSGSTRFT 59
MSE M+++DPS+LHLKKELTQIRKAARVLRDPGTT ++WK + +
Sbjct: 1 MSECMKMNDPSRLHLKKELTQIRKAARVLRDPGTT-------------SSWKSTSRSTAN 47
Query: 60 ATANPNSQLDSALPPSINDKDK--------RVFLYNWKNYKSSSEK 97
NPNS LP S K K VFLYNW NY S K
Sbjct: 48 PFRNPNS-----LPTSSKHKHKDNNNNNNNTVFLYNWNNYNKSFNK 88
>Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113306-43108849 | 20130731
Length = 935
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/534 (43%), Positives = 305/534 (57%), Gaps = 46/534 (8%)
Query: 472 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 531
S S K++P F +L+GQN+V +SL A+SRGRIA YLF GPRGTGKTS +RIFAAALNC
Sbjct: 279 SLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNC 338
Query: 532 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 591
++ +E +PCG C EC F SG+S D+ EVD DKA+ L+K + RY
Sbjct: 339 ISLEE-RRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKN-ACTTAPFSSRYK 396
Query: 592 VFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDG 651
VF+ DEC LL +TW LL L Q VVF+ IT DL+ +PR+ SR Q+Y F KIKD
Sbjct: 397 VFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDA 456
Query: 652 DIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVG 711
DI RL++I +E L+ E DALD IA + GSLRDAE ML+QLSLLGK+IT SLV EL G
Sbjct: 457 DIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
Query: 712 VVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDV 771
V+SD++LL+LL+L++SSD + TV RAREL+ S +DP+ L+SQLA LIMDI+AG +
Sbjct: 517 VISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGS 576
Query: 772 KPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLGSIPSPDLX 831
+ F R ++ES +++L +AL++LSE EKQLR S +TTWFTA LLQL S+ +
Sbjct: 577 EI-RRRFSDRHISESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEYSSVD 635
Query: 832 XXXXXXXXXXXXXXEDDPSSASRDVTSFKQKSDLSPASHLKAANGSSVHQKVISSRIDGF 891
+ D S S S K HL + K+
Sbjct: 636 ANDSKLCIRAASNRDGDLCSTSSTAESLK---------HLATGKCAEKSYKI-------- 678
Query: 892 IKRPKXXXXXXXXXXXXXDDLIVGNAMFRCIDSGQLGDIWAHCIERCHSKTLRQLLHNHG 951
DD D L IW E C SK L+ L G
Sbjct: 679 ---------------EVQDD-----------DKATLDCIWYKATEICESKRLKAFLRKQG 712
Query: 952 KLVSLCEVEGVLAAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLP 1005
KL S+C +G+ A + F RAE+ + I +S++ +L N+E+RI H+P
Sbjct: 713 KLSSVCINQGLAAVELEFHHRVYVARAEKSWKQIASSLQFILGCNIELRINHVP 766
>Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113918-43109005 | 20130731
Length = 936
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/538 (43%), Positives = 305/538 (56%), Gaps = 53/538 (9%)
Query: 472 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 531
S S K++P F +L+GQN+V +SL A+SRGRIA YLF GPRGTGKTS +RIFAAALNC
Sbjct: 279 SLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNC 338
Query: 532 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 591
++ +E +PCG C EC F SG+S D+ EVD DKA+ L+K + RY
Sbjct: 339 ISLEE-RRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKN-ACTTAPFSSRYK 396
Query: 592 VFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDG 651
VF+ DEC LL +TW LL L Q VVF+ IT DL+ +PR+ SR Q+Y F KIKD
Sbjct: 397 VFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDA 456
Query: 652 DIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVG 711
DI RL++I +E L+ E DALD IA + GSLRDAE ML+QLSLLGK+IT SLV EL G
Sbjct: 457 DIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
Query: 712 VVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTV--- 768
V+SD++LL+LL+L++SSD + TV RAREL+ S +DP+ L+SQLA LIMDI+AG +
Sbjct: 517 VISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGS 576
Query: 769 -VDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLGSIPS 827
+ + D H L ES +++L +AL++LSE EKQLR S +TTWFTA LLQL S+
Sbjct: 577 EIRRRFSDRHI----LAESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEY 632
Query: 828 PDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQKSDLSPASHLKAANGSSVHQKVISSR 887
+ + D S S S K HL + K+
Sbjct: 633 SSVDANDSKLCIRAASNRDGDLCSTSSTAESLK---------HLATGKCAEKSYKI---- 679
Query: 888 IDGFIKRPKXXXXXXXXXXXXXDDLIVGNAMFRCIDSGQLGDIWAHCIERCHSKTLRQLL 947
DD D L IW E C SK L+ L
Sbjct: 680 -------------------EVQDD-----------DKATLDCIWYKATEICESKRLKAFL 709
Query: 948 HNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLP 1005
GKL S+C +G+ A + F RAE+ + I +S++ +L N+E+RI H+P
Sbjct: 710 RKQGKLSSVCINQGLAAVELEFHHRVYVARAEKSWKQIASSLQFILGCNIELRINHVP 767
>Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258656-5265014 | 20130731
Length = 1177
Score = 353 bits (905), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 215/520 (41%), Positives = 295/520 (56%), Gaps = 59/520 (11%)
Query: 327 RQGCGIPCYWSKRTPKHRGA-----CGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSF 381
+ GCG+P WS+ HRG GR S LSD+ +KG S+
Sbjct: 329 KNGCGMPWNWSR--IHHRGKTFLDIAGRSLSCGLSDSRLKKGRSL--------------- 371
Query: 382 SASNKRRIS------------SRSAQGVLPLLTNSGDVR---EGSSIGTGRSDDELSTNF 426
SN R IS + S LPLL ++ E + G G S
Sbjct: 372 -TSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWGHGYS-------- 422
Query: 427 GELDLEG--LSRLD-GRRWSTSCRSQEGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFG 483
GEL + G L + D ++ RS + N S +QKY P F
Sbjct: 423 GELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRH-------QSLTQKYIPRTFR 475
Query: 484 ELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGY 543
+++GQN+V Q+L NAVSR ++ +Y+F GP GTGKTS ARIFA ALNC +S E KPCG+
Sbjct: 476 DMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC-SSSEHPKPCGF 534
Query: 544 CRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPS 603
C C GKS ++ EV + + LL + + +Y VF+FD+C L +
Sbjct: 535 CNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPS--QYRVFIFDDCDSLSA 592
Query: 604 KTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQ 663
W + K ++ P+RVVFI +++ LD +P I SRCQK+ F K+KD DIV L I+T+
Sbjct: 593 DCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATK 652
Query: 664 ESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLE 723
E LD++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++LL+
Sbjct: 653 EGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLD 712
Query: 724 LAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSL 783
LA+S+D TVK R +M++GV+P+ LMSQLA +I DI+AG+Y + F + L
Sbjct: 713 LALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPL 772
Query: 784 NESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLG 823
++ ++E+L+ ALK LSEAEKQLR S+++ TW TA LLQL
Sbjct: 773 SKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 812
>Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258652-5265014 | 20130731
Length = 1177
Score = 353 bits (905), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 215/520 (41%), Positives = 295/520 (56%), Gaps = 59/520 (11%)
Query: 327 RQGCGIPCYWSKRTPKHRGA-----CGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSF 381
+ GCG+P WS+ HRG GR S LSD+ +KG S+
Sbjct: 329 KNGCGMPWNWSR--IHHRGKTFLDIAGRSLSCGLSDSRLKKGRSL--------------- 371
Query: 382 SASNKRRIS------------SRSAQGVLPLLTNSGDVR---EGSSIGTGRSDDELSTNF 426
SN R IS + S LPLL ++ E + G G S
Sbjct: 372 -TSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWGHGYS-------- 422
Query: 427 GELDLEG--LSRLD-GRRWSTSCRSQEGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFG 483
GEL + G L + D ++ RS + N S +QKY P F
Sbjct: 423 GELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRH-------QSLTQKYIPRTFR 475
Query: 484 ELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGY 543
+++GQN+V Q+L NAVSR ++ +Y+F GP GTGKTS ARIFA ALNC +S E KPCG+
Sbjct: 476 DMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC-SSSEHPKPCGF 534
Query: 544 CRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPS 603
C C GKS ++ EV + + LL + + +Y VF+FD+C L +
Sbjct: 535 CNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPS--QYRVFIFDDCDSLSA 592
Query: 604 KTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQ 663
W + K ++ P+RVVFI +++ LD +P I SRCQK+ F K+KD DIV L I+T+
Sbjct: 593 DCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATK 652
Query: 664 ESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLE 723
E LD++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEKL++LL+
Sbjct: 653 EGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLD 712
Query: 724 LAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSL 783
LA+S+D TVK R +M++GV+P+ LMSQLA +I DI+AG+Y + F + L
Sbjct: 713 LALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPL 772
Query: 784 NESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLG 823
++ ++E+L+ ALK LSEAEKQLR S+++ TW TA LLQL
Sbjct: 773 SKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 812
>Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261613-34257458 | 20130731
Length = 903
Score = 322 bits (825), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/370 (48%), Positives = 246/370 (66%), Gaps = 8/370 (2%)
Query: 461 GEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTS 520
GE + S K++P+ F +L+GQ++VV+SL+ A+S RI YLF GPRGTGKTS
Sbjct: 255 GESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTS 314
Query: 521 TARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLS 580
++IFA ALNC+ S++ +PCG CREC F SG+S D+ EVD D+ + L+K +
Sbjct: 315 ASKIFACALNCI-SNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVK--N 371
Query: 581 IGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 640
R+ VF+ DEC LL +TW L + Q VF+ IT+DLD +P++ SR
Sbjct: 372 ACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRA 431
Query: 641 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKR 700
QKY F K++D +I +L KI T+E LD E ALDLIA + GS+RDAE ML+QLSLLGK+
Sbjct: 432 QKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKK 491
Query: 701 ITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMD 760
I SLV EL G+VSD++LL+LL+LA+S D + TV RARELM S +DP+ L+SQL LIMD
Sbjct: 492 IKISLVYELTGIVSDDELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMD 551
Query: 761 IIAGSYTVVDVKPDD--SHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTAT 818
I+AG++ + D+ S + R ++++L +L +AL++ +EAEKQLR S ++TWFT
Sbjct: 552 ILAGNH---ENGGDEVRSKYSSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVA 608
Query: 819 LLQLGSIPSP 828
LLQL S P
Sbjct: 609 LLQLSSADYP 618
>Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261100-34257458 | 20130731
Length = 653
Score = 320 bits (820), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 178/370 (48%), Positives = 246/370 (66%), Gaps = 8/370 (2%)
Query: 461 GEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTS 520
GE + S K++P+ F +L+GQ++VV+SL+ A+S RI YLF GPRGTGKTS
Sbjct: 255 GESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTS 314
Query: 521 TARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLS 580
++IFA ALNC+ S++ +PCG CREC F SG+S D+ EVD D+ + L+K +
Sbjct: 315 ASKIFACALNCI-SNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVK--N 371
Query: 581 IGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 640
R+ VF+ DEC LL +TW L + Q VF+ IT+DLD +P++ SR
Sbjct: 372 ACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRA 431
Query: 641 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKR 700
QKY F K++D +I +L KI T+E LD E ALDLIA + GS+RDAE ML+QLSLLGK+
Sbjct: 432 QKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKK 491
Query: 701 ITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMD 760
I SLV EL G+VSD++LL+LL+LA+S D + TV RARELM S +DP+ L+SQL LIMD
Sbjct: 492 IKISLVYELTGIVSDDELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMD 551
Query: 761 IIAGSYTVVDVKPDD--SHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTAT 818
I+AG++ + D+ S + R ++++L +L +AL++ +EAEKQLR S ++TWFT
Sbjct: 552 ILAGNH---ENGGDEVRSKYSSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVA 608
Query: 819 LLQLGSIPSP 828
LLQL S P
Sbjct: 609 LLQLSSADYP 618
>Medtr3g088380.1 | replication factor C subunit 2 | HC |
chr3:40162477-40157119 | 20130731
Length = 339
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 29/295 (9%)
Query: 475 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 534
+KY+P ++ Q VV+ L N + G P LF GP GTGKT+TA A L
Sbjct: 13 EKYRPKQVKDVAHQEEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTALAIAHQLF---- 67
Query: 535 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK---RLSIGXXXXXX--- 588
P Y S ++E++ ++ RGI+ R +K +++G
Sbjct: 68 ----GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYP 112
Query: 589 --RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 646
Y + V DE + L + +E + F FI + + + + SRC K+ F
Sbjct: 113 CPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172
Query: 647 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGKRITTSL 705
+ + + R+ I +E + ++ + L ++ + G LR A T L+ + L G I++
Sbjct: 173 PLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKD 232
Query: 706 VNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMD 760
+ + G+V E + LL+ S + K + G +++QL I++
Sbjct: 233 LISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVE 287
>Medtr3g088380.2 | replication factor C subunit 2 | HC |
chr3:40162519-40157119 | 20130731
Length = 339
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 29/295 (9%)
Query: 475 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 534
+KY+P ++ Q VV+ L N + G P LF GP GTGKT+TA A L
Sbjct: 13 EKYRPKQVKDVAHQEEVVRVLTNTLETGS-CPHMLFYGPPGTGKTTTALAIAHQLF---- 67
Query: 535 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK---RLSIGXXXXXX--- 588
P Y S ++E++ ++ RGI+ R +K +++G
Sbjct: 68 ----GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYP 112
Query: 589 --RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 646
Y + V DE + L + +E + F FI + + + + SRC K+ F
Sbjct: 113 CPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 172
Query: 647 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGKRITTSL 705
+ + + R+ I +E + ++ + L ++ + G LR A T L+ + L G I++
Sbjct: 173 PLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKD 232
Query: 706 VNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMD 760
+ + G+V E + LL+ S + K + G +++QL I++
Sbjct: 233 LISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVE 287
>Medtr3g088120.2 | replication factor C subunit 5 | HC |
chr3:39964069-39959228 | 20130731
Length = 300
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 475 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 534
+KY+P ++ +V ++ + R+ P L GP GTGKTST I A A +
Sbjct: 36 EKYRPQSLDDVAAHRDIVDTIDRLTTENRL-PHLLLYGPPGTGKTST--ILAVARKLYGA 92
Query: 535 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK------RLSIGXXXXXX 588
N ++E++ ++ RGID R ++ LS G
Sbjct: 93 QYHNM------------------ILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVK 134
Query: 589 RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKI 648
+ + DE + L + +E+ + F I + ++ + +QSRC ++ F +
Sbjct: 135 ---LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPL 191
Query: 649 KDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLV 706
+ RL+ + E LDV+ L + ++G +R A +L+ + ++IT V
Sbjct: 192 DAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAV 249
>Medtr3g088120.1 | replication factor C subunit 5 | HC |
chr3:39964069-39957680 | 20130731
Length = 355
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 475 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 534
+KY+P ++ +V ++ + R+ P L GP GTGKTST I A A +
Sbjct: 36 EKYRPQSLDDVAAHRDIVDTIDRLTTENRL-PHLLLYGPPGTGKTST--ILAVARKLYGA 92
Query: 535 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLK------RLSIGXXXXXX 588
N ++E++ ++ RGID R ++ LS G
Sbjct: 93 QYHNM------------------ILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVK 134
Query: 589 RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKI 648
+ + DE + L + +E+ + F I + ++ + +QSRC ++ F +
Sbjct: 135 ---LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPL 191
Query: 649 KDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLV 706
+ RL+ + E LDV+ L + ++G +R A +L+ + ++IT V
Sbjct: 192 DAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAV 249
>Medtr4g102860.1 | replication factor C subunit 2 | HC |
chr4:42642450-42637960 | 20130731
Length = 333
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 24/219 (10%)
Query: 468 DNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAA 527
D W +KY+P +++G V L ++R P + GP GTGKT++ I A
Sbjct: 14 DVPWV--EKYRPSKVVDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTTS--ILAL 68
Query: 528 ALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXX 587
A + + RE ++E++ ++ RGID R +K +
Sbjct: 69 AHELLGPNY--------REA----------VLELNASDDRGIDVVRNKIKMFAQKKVTLP 110
Query: 588 -XRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFN 646
R+ V + DE + S L + +E F + + IQSRC F+
Sbjct: 111 PGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFS 170
Query: 647 KIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLR 685
++ D +I+ RL + E + + L+ I ADG +R
Sbjct: 171 RLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMR 209