Miyakogusa Predicted Gene

Lj4g3v0014220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0014220.1 Non Characterized Hit- tr|I1L3L8|I1L3L8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,43.14,6e-17,ATPases
associated with a variety of ce,AAA+ ATPase domain; C-terminal,
D2-small domain, of ClpB pr,,gene.g51420.t1.1
         (526 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...   416   e-116
Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...   378   e-105
Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC | chr...   139   7e-33
Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protei...    52   1e-06

>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/382 (62%), Positives = 280/382 (73%), Gaps = 49/382 (12%)

Query: 183 IFNALNQFVVGQEKPKKLLSVAVYNHYIRLRLATTQPESQSSD-------QDTDLVQPEK 235
           I   L++FV+GQ + KK+LSVAVYNHY R+  AT  P+   +D        D + V+ EK
Sbjct: 252 ICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHATL-PKGSGADSGISGILDDDENVELEK 310

Query: 236 SNVLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQEA--DFDVE------------- 280
           SNVLL+GPTGSGKTLLAKTLAR VNVPF IADATT TQ      DVE             
Sbjct: 311 SNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYN 370

Query: 281 --LAQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQS 338
              AQ+GI+Y+DEVDKITKK ESLNI RDVSGEGVQQALLKMLE T+V+VP+KGARK+  
Sbjct: 371 VAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPR 430

Query: 339 GDSVLIDTKNILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRACGLPDAAVTSSLL 398
           GD++ IDTKNILFICGGAF++LEK ISER+QDSSIGFG PVRAN+R+  + D+AV SSLL
Sbjct: 431 GDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANIRSGRIIDSAVASSLL 490

Query: 399 ENVESGDLIAYGLIPEFVGRFPILAGLSALSEDQLLQ---------------------VN 437
           E+VES DLIAYGLIPEF+GRFPIL  LSAL+E+QL+Q                     V 
Sbjct: 491 ESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQVLTEPKHALGKQYKKLVGMNEVK 550

Query: 438 LHFTDNALRLIAKKAMAKNTGARGLRALLENILTEAMFEVPD-KADIGNIEGVLVDEEAV 496
           LHFTD ALR+IAKKAMAKNTGARGLRAL+ENILT+AM+E+PD K     I+ V+VDEE+V
Sbjct: 551 LHFTDKALRMIAKKAMAKNTGARGLRALIENILTDAMYEIPDIKTGSDRIDAVVVDEESV 610

Query: 497 GSLNGHGCGAKILYRDNNGSLE 518
           GSL   GCG KIL  D  G+LE
Sbjct: 611 GSLTAPGCGGKILRGD--GALE 630



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 13/82 (15%)

Query: 86  IRADMNCPRCSRNMSVIFSNRPL-------------SISGHQPGLYQALNLCPSCKTAFY 132
           IRA+ NCPRCS++M++ FSNR +             ++  +  G YQA+NLCP+CKTA++
Sbjct: 31  IRAEANCPRCSKDMNLFFSNRHMQSNGGDSGGGNGENLGSNGDGGYQAVNLCPNCKTAYH 90

Query: 133 FRPLKLSPLHGTFIEIARLNHH 154
           FRP   SPL GTF+EI R++++
Sbjct: 91  FRPYNTSPLQGTFVEIGRVSNN 112


>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/378 (57%), Positives = 266/378 (70%), Gaps = 54/378 (14%)

Query: 183 IFNALNQFVVGQEKPKKLLSVAVYNHYIRLRLATTQPESQSSDQDTD-----------LV 231
           I   L++ V+GQE+ KK+LSVAVYNHY R+     +    + D + D            V
Sbjct: 169 ICKGLDKHVIGQERAKKVLSVAVYNHYKRIY---HEKLWHAGDSNIDGKADVVVDDDDDV 225

Query: 232 QPEKSNVLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQEADF--DVE--------- 280
           + EKSN+LL+GPTGSGKTLLAKTLAR VNVPF IADATT TQ      DVE         
Sbjct: 226 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAA 285

Query: 281 ------LAQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGAR 334
                  AQ+GIVY+DEVDKITKK ESLNI RDVSGEGVQQALLKMLE T+V+VP+KGAR
Sbjct: 286 ADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAR 345

Query: 335 KHQSGDSVLIDTKNILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRACGLPDAAVT 394
           KH  GD++ IDTKNILFICGGAF++LEK ISER+QDSSIGFG PVRA M+A  + +A++ 
Sbjct: 346 KHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRAKMKAGSVTEASIA 405

Query: 395 SSLLENVESGDLIAYGLIPEFVGRFPILAGLSALSEDQLLQ------------------- 435
           SSLL  VES DLIAYGLIPEFVGRFPIL  LSAL+E+QL+Q                   
Sbjct: 406 SSLLGTVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKSALEKQYKKTFQI 465

Query: 436 --VNLHFTDNALRLIAKKAMAKNTGARGLRALLENILTEAMFEVPD-KADIGNIEGVLVD 492
             V LHFT++A + IA++AM+KNTGARGLRA++E+IL +AM+E+PD +     I+ V+VD
Sbjct: 466 NGVKLHFTESARKSIARQAMSKNTGARGLRAIIESILVDAMYEIPDIRTGDDVIDAVVVD 525

Query: 493 EEAVGSLNGHGCGAKILY 510
           E++VG   G   GAKILY
Sbjct: 526 EDSVGG-EGSVRGAKILY 542


>Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC |
           chr4:56399353-56401236 | 20130731
          Length = 225

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 91/128 (71%), Gaps = 22/128 (17%)

Query: 239 LLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQ-----------------EADFDVEL 281
           LLIGPT SGKTLL KTLARIVNVPF +AD+TTFTQ                 EADFDVEL
Sbjct: 74  LLIGPTDSGKTLLPKTLARIVNVPFTMADSTTFTQAGYVGQDVHSILYNLLQEADFDVEL 133

Query: 282 AQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQSGDS 341
           AQ GIVY+DE+DKIT K ES++ GRDVSGEGVQ ALLKMLEST   +PDK    + +G  
Sbjct: 134 AQPGIVYIDEIDKITNKSESISGGRDVSGEGVQHALLKMLEST---IPDKTDIDNING-- 188

Query: 342 VLIDTKNI 349
           VL+D + +
Sbjct: 189 VLVDEEAV 196



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 477 VPDKADIGNIEGVLVDEEAVGSLNGHGCGAKILYRDNNGSLEGQARAICL 526
           +PDK DI NI GVLVDEEAVG +NG GCGAKI+ RD +G+LE QAR +CL
Sbjct: 177 IPDKTDIDNINGVLVDEEAVGQVNGTGCGAKIICRD-DGALECQARTMCL 225


>Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr8:18930054-18944115 | 20130731
          Length = 988

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 35/178 (19%)

Query: 238 VLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQ-------EADFDVELAQRG---IV 287
           VLL GP G+GKTL A+TLA+   +PF  A    FT        + +    LA+R     V
Sbjct: 509 VLLSGPPGTGKTLFARTLAKQSGLPFVFASGAEFTDSEKSGAAKINKMFSLARRNAPCFV 568

Query: 288 YVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQSGDSVLIDTK 347
           +VDE+D I  +    +  +D   +   +AL+  L+            K ++G   +   +
Sbjct: 569 FVDEIDAIAGR----HTRKDPRRKATFEALITQLD----------GEKEKTGIDRVSLRQ 614

Query: 348 NILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRA-CGLPDAAVTSSLLENVESG 404
            ++FIC           + R  +  + F  P R + R   GLPDA     + +   SG
Sbjct: 615 AVIFICA----------TNRADELDLDFVRPGRIDRRLYIGLPDAEQRIKIFDVHSSG 662