Miyakogusa Predicted Gene

Lj3g3v3765550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3765550.1 Non Characterized Hit- tr|I1R4H9|I1R4H9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,28.7,1e-17,coiled-coil,NULL; GB DEF: F15O4.40,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,CUFF.46329.1
         (672 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g103260.1 | fanconi anemia, complementation group M protei...   852   0.0  
Medtr8g038430.1 | hypothetical protein | LC | chr8:14253204-1425...    58   4e-08

>Medtr1g103260.1 | fanconi anemia, complementation group M protein |
            HC | chr1:46727606-46713877 | 20130731
          Length = 1198

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/657 (68%), Positives = 504/657 (76%), Gaps = 25/657 (3%)

Query: 18   IPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPSKDKLTLAEIDLLENYFHQTGENKC 77
            IPH+ KPEVQYVELSIEKFIPRQ NV +DHL IS SK KLTLAEIDLLE YFH TGEN+C
Sbjct: 565  IPHVFKPEVQYVELSIEKFIPRQNNVKEDHLQISASKVKLTLAEIDLLEKYFHSTGENRC 624

Query: 78   RLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLIAIPKDRKT--LQEHQWLGDS 135
            RLSLIAFPHFQTFPSRVHKVKHS GTLMLIDMMQRLQGL A P D K   LQE Q L +S
Sbjct: 625  RLSLIAFPHFQTFPSRVHKVKHSCGTLMLIDMMQRLQGLAAYPGDSKNSPLQEGQCLENS 684

Query: 136  KQIAIAELDEAIKDNESCRTHTVGRNGVSVSCLELDSCHLGIQTKEFVDLTQEDSTLCDL 195
            K +   ELDEA  DNE     T+GRN  SV+ LELDSC                    D+
Sbjct: 685  KPLDSTELDEAKNDNELFSRDTMGRNADSVNILELDSC--------------------DM 724

Query: 196  VKNQDETCEGDEIIPETPIAMRNVSNEGAKAGETVNVAESQTSLMAANACISGMGDEEFS 255
             K+QDETC+ DEIIPETP   +N SNEGA A ET N  E  TS +A +AC + M DEE S
Sbjct: 725  DKHQDETCDVDEIIPETPDGKQNFSNEGANAIETANPIEKPTSSLAVDACDNSMRDEELS 784

Query: 256  PRLTNFIKSGVVPESPIDERGPLKDKCVIRDCISPVHFQEEQGVSALNSRDTEKVIIDHD 315
            PRLTN I+SGVVPESPIDERG   ++ +IR CISP H QEEQ V +LN R T+K  +D  
Sbjct: 785  PRLTNLIRSGVVPESPIDERGQSGNRFLIRGCISPAHLQEEQDVDSLNCRKTKKATVDSG 844

Query: 316  TCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDEAHTYIADPSFSEESHSACGEMSM 375
            T KNVCTSPV++T+TPLL+LKNCAI RGRVF++Q++E H +I DPSFSEESH +CGEMS+
Sbjct: 845  TGKNVCTSPVNETETPLLELKNCAITRGRVFVTQLEEGHKHIVDPSFSEESHPSCGEMSV 904

Query: 376  SIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYKHGQGKRKSTHNV 435
            SIKPA+KFKRLRK+EDT+SNMN K+N +  +++ F   S ASNPT YK GQG RK   NV
Sbjct: 905  SIKPARKFKRLRKIEDTESNMNHKNNNVFDSSSNFSKPSSASNPTRYKRGQGIRKQA-NV 963

Query: 436  REFIEEEAEVSSDAYVSNDEDVEDGNSHDSFIDDRTNPTAASQPEASRIDMMAIYRRSLL 495
            R+FIEEEAEVSSDA VSNDEDVED NS DSFIDDR N TAASQPEASR+DMMAIYRRSLL
Sbjct: 964  RDFIEEEAEVSSDASVSNDEDVEDDNSVDSFIDDRINATAASQPEASRMDMMAIYRRSLL 1023

Query: 496  SQTPINGGLNFPATFSPDDVMTTASISESRDSSGKTVSHFRTGPTNQSANRTSESVHIDQ 555
            SQTPI+GGL F  TFSPD+V  TASI ES +SSGKTVS F+TG TN SA RTSESV +DQ
Sbjct: 1024 SQTPISGGLKFSTTFSPDNVTMTASIGESGNSSGKTVSCFQTGQTNHSAIRTSESVRMDQ 1083

Query: 556  ITSEAVXXXXXXXXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKESVDGEATIDV 615
            +TSEAV           D+RSRKRRLT++HS HFP+ NLEQ+FAL+SKKESV+  ATID 
Sbjct: 1084 MTSEAV--PSTSFPTETDIRSRKRRLTYHHSVHFPSKNLEQDFALQSKKESVNTNATIDG 1141

Query: 616  LCDDQFYNDLDLDELEAQATSLLKEKSDLSSHKQTTAPQSHATNLDVFRSPSFDLGI 672
            LCDDQFYND+DLDELEAQATS+LK K D S  KQ T PQSH  NLDV  SPSFDLGI
Sbjct: 1142 LCDDQFYNDIDLDELEAQATSILKRKLDPSIQKQDTNPQSHEPNLDVIMSPSFDLGI 1198


>Medtr8g038430.1 | hypothetical protein | LC |
           chr8:14253204-14252701 | 20130731
          Length = 89

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 35/43 (81%)

Query: 519 ASISESRDSSGKTVSHFRTGPTNQSANRTSESVHIDQITSEAV 561
           ASI ES +SSGKTVS FRTG +  SAN TSESV IDQ+TSE+V
Sbjct: 3   ASIGESGNSSGKTVSRFRTGKSRHSANPTSESVCIDQMTSESV 45