Miyakogusa Predicted Gene

Lj3g3v3752020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3752020.1 Non Characterized Hit- tr|B9F278|B9F278_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,71.7,0.000000000000001,seg,NULL,CUFF.46288.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g035825.1 | low psii accumulation protein, putative | HC |...   145   2e-35

>Medtr4g035825.1 | low psii accumulation protein, putative | HC |
           chr4:12638815-12635852 | 20130731
          Length = 196

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 104/178 (58%), Gaps = 23/178 (12%)

Query: 2   KMALQTQXXXXXXXXXXXXXXXXXXVQHTH---LLIRSEKAS---DSAPQKPGVGFG--- 52
           KMALQTQ                  +QH+      I+SEK S   DS P K GVGFG   
Sbjct: 29  KMALQTQFVTSFTTK----------LQHSFSPTFTIKSEKPSEPSDSIPNKTGVGFGPSN 78

Query: 53  ----QTKQXXXXXXXXXXXXSPVEKPALFDSSEQKQQQTVEQSKTETAFLLAWLGFGAVI 108
               + KQ            +PVEKPA      Q+Q Q  E+S  E  F+LAWLGFG+VI
Sbjct: 79  GNNTKRKQKGQRDRASIIRRNPVEKPAFVSEQLQQQPQVQEESAVEKGFILAWLGFGSVI 138

Query: 109 LVEGIALAASGFLPEEWDKIFVKYVYPSFTPTVLFFFAGAVVYGVLKYLQNDNITQQK 166
           LVEGIALAASGF P+EWD   VKY+YPSFTP+VL F AGAV +GV+KY QN+ +T QK
Sbjct: 139 LVEGIALAASGFFPDEWDNFLVKYLYPSFTPSVLLFLAGAVAFGVVKYKQNEKLTDQK 196