Miyakogusa Predicted Gene

Lj3g3v3736620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3736620.1 Non Characterized Hit- tr|I1L5P9|I1L5P9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56196
PE,94.96,0,PCI,Proteasome component (PCI) domain; motif in proteasome
subunits, Int-6, Nip-1 a,Proteasome compo,CUFF.46249.1
         (397 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0173s0030.1 | COP9 signalosome complex subunit-like protein...   740   0.0  
Medtr2g034320.1 | hypothetical protein | LC | chr2:13108199-1310...    61   2e-09
Medtr4g036185.1 | hypothetical protein | LC | chr4:13004596-1300...    52   1e-06

>Medtr0173s0030.1 | COP9 signalosome complex subunit-like protein |
           HC | scaffold0173:7389-25431 | 20130731
          Length = 397

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/397 (91%), Positives = 369/397 (92%)

Query: 1   MESAFASASAITDQRQKIEQYKQILSAVISSNDIAQARRFIDHMLSDDVPLVVSRQLLQT 60
           ME AFASASAITDQRQKIEQYKQILSAVISSNDI  AR+FIDHMLSDDVPLVVSRQLLQ+
Sbjct: 1   MEGAFASASAITDQRQKIEQYKQILSAVISSNDILHARKFIDHMLSDDVPLVVSRQLLQS 60

Query: 61  FAEELGRLGAGTQKEIAHYTLTQIQPRVVSFEEQVLVIREKLAELYESEEQWSKAAQMLS 120
           FAEELGRL   TQKEIAHY L QIQPRVVSFEEQVLVIREKLAELYESEEQWSKAAQMLS
Sbjct: 61  FAEELGRLAPETQKEIAHYILAQIQPRVVSFEEQVLVIREKLAELYESEEQWSKAAQMLS 120

Query: 121 GIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLKYK 180
           GIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVN EAFINKASFLVSNSQHEVLNLKYK
Sbjct: 121 GIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVNDEAFINKASFLVSNSQHEVLNLKYK 180

Query: 181 VCYARILDMKRKFLEAALRYYDISQIEKRXXXXXXXXXXXXXXXXSAAVTCTILAAAGPQ 240
           VCYARILD+KRKFLEAALRYYDISQIEKR                SAAVTCTILA AGPQ
Sbjct: 181 VCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEINEEALGQALSAAVTCTILAGAGPQ 240

Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
           RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300

Query: 301 RAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAIIHF 360
           RAMIEHNLLSASKLYTNISFDELGTLLGIPP KAEKIASRMIYEDRM+GSIDQVEAIIHF
Sbjct: 301 RAMIEHNLLSASKLYTNISFDELGTLLGIPPPKAEKIASRMIYEDRMKGSIDQVEAIIHF 360

Query: 361 DDDTEELQRWDQQIVGLCQALNDVLDSMAKKGVPVPV 397
           DDDTEELQRWDQQIVGLCQALNDVLDSM KKG+PVPV
Sbjct: 361 DDDTEELQRWDQQIVGLCQALNDVLDSMGKKGIPVPV 397


>Medtr2g034320.1 | hypothetical protein | LC |
           chr2:13108199-13107846 | 20130731
          Length = 117

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 19/88 (21%)

Query: 97  VIREKLAELYES-EEQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVN 155
           + R  + E  ES EE  +K AQ   G+ +   M  IDD F+LSKCV+IAC          
Sbjct: 20  ITRSAMKEFVESDEETMTKLAQ--EGVVV---MHEIDDIFKLSKCVEIAC---------- 64

Query: 156 AEAFINKASFLVSNSQHEVLNLKYKVCY 183
              FINK SFLVSN+Q+EVL+LK K+ Y
Sbjct: 65  ---FINKRSFLVSNNQYEVLSLKCKIFY 89


>Medtr4g036185.1 | hypothetical protein | LC |
           chr4:13004596-13005076 | 20130731
          Length = 105

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 374 IVGLCQALNDVLDSMAKKGVPVPV 397
           IVGLCQALNDVLDSM KKG+PVPV
Sbjct: 82  IVGLCQALNDVLDSMGKKGIPVPV 105