Miyakogusa Predicted Gene
- Lj3g3v3725550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3725550.1 Non Characterized Hit- tr|I1L5P7|I1L5P7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33422
PE,86.29,0,KH_TYPE_1,K Homology domain, type 1; RRM,RNA recognition
motif domain; ZF_CCHC,Zinc finger, CCHC-typ,CUFF.46235.1
(632 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 853 0.0
Medtr2g005590.2 | RNA-binding KH domain protein | HC | chr2:2238... 114 3e-25
Medtr2g005590.3 | RNA-binding KH domain protein | HC | chr2:2237... 109 7e-24
Medtr2g005590.1 | RNA-binding KH domain protein | HC | chr2:2237... 109 7e-24
Medtr7g074100.1 | RNA-binding KH domain protein | HC | chr7:2767... 109 9e-24
Medtr8g006605.1 | RNA-binding KH domain protein | HC | chr8:7443... 108 2e-23
Medtr8g006580.1 | RNA-binding KH domain protein | HC | chr8:7074... 108 2e-23
Medtr8g005550.1 | RNA-binding KH domain protein | HC | chr8:2306... 108 2e-23
Medtr8g005430.1 | RNA-binding KH domain protein | HC | chr8:8684... 107 4e-23
Medtr5g075710.1 | RNA-binding KH domain protein | HC | chr5:3222... 106 7e-23
Medtr5g075710.3 | RNA-binding KH domain protein | HC | chr5:3222... 105 1e-22
Medtr3g010220.1 | RNA-binding KH domain protein | HC | chr3:2351... 105 1e-22
Medtr5g075710.2 | RNA-binding KH domain protein | HC | chr5:3222... 105 1e-22
Medtr3g083770.1 | RNA-binding KH domain protein | HC | chr3:3779... 103 7e-22
Medtr3g083770.2 | RNA-binding KH domain protein | HC | chr3:3779... 102 1e-21
Medtr3g062640.1 | RNA-binding KH domain protein | HC | chr3:2830... 79 2e-14
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 70 9e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-10
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-10
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 7e-10
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 63 8e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-10
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 63 1e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 62 2e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 8e-09
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 8e-09
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 8e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 58 3e-08
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 6e-08
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 6e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 7e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-07
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 3e-07
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 54 4e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 54 4e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 54 4e-07
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 5e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 7e-07
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 53 8e-07
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 1e-06
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 52 2e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 51 4e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-06
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-06
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 50 5e-06
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 50 5e-06
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 50 5e-06
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 8e-06
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/648 (70%), Positives = 469/648 (72%), Gaps = 18/648 (2%)
Query: 1 MGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRA 60
MGGIEFDPEIQ LNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRA
Sbjct: 122 MGGIEFDPEIQTLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRA 181
Query: 61 RERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNT 120
RER QKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNT
Sbjct: 182 RERFQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNT 241
Query: 121 QKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDALEAAAGMV 180
QKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEA+T DALEAAAGMV
Sbjct: 242 QKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMV 301
Query: 181 EKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVV 240
EKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVV
Sbjct: 302 EKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVV 361
Query: 241 CKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSN 300
CKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESA K TSTLAIGSG+SGSN
Sbjct: 362 CKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLAIGSGSSGSN 421
Query: 301 PPWXXXXXXXXXXXXXXXXXXXXVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMA 360
PPW VKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMA
Sbjct: 422 PPW-ANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMA 480
Query: 361 KVIKDRMTGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRXXXXXXXXXXXXXXX 420
KVIKDR+TGLSKGYGFVKYADITMANNAI+AMNGYRLEGRTIAVR
Sbjct: 481 KVIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPP 540
Query: 421 XXXXXXXXVPSQPHGAYPSQQQYAAGGPLGVAPPTNYGGTXXXXXXXXXXXXXXXXXXXX 480
V SQP GAYPS QQY GGP+G APP +YGGT
Sbjct: 541 ASAVPTYPVQSQPIGAYPS-QQYTGGGPIGNAPPGSYGGTPVPWGPPIPPPYNPYAPPPP 599
Query: 481 GSTXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXTSNEQQSYPPGVQSDNSTSTQSIP 535
GST + QQ+YPPGVQSDN++STQS+P
Sbjct: 600 GSTMYPPMHSQPMPPYGVQYPPMPTGPPGATPPPPASGEMQQNYPPGVQSDNNSSTQSVP 659
Query: 536 ASMYGNT--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEQSPSFGNVPWASNP 593
+MYGNT TS+QS S N PWASN
Sbjct: 660 TNMYGNTMPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPAPTSDQSHSIANAPWASNH 719
Query: 594 MVPPP-PSDNQSQP--------RATNPPLPPASSAGDSEYEKFMAEMK 632
PPP S +QSQ N S DSEYEKFMAEMK
Sbjct: 720 SAPPPLSSADQSQSIGNVPPPMPPPNSSAEKTSYGADSEYEKFMAEMK 767
>Medtr2g005590.2 | RNA-binding KH domain protein | HC |
chr2:223815-220572 | 20130731
Length = 311
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 85/123 (69%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L +P+ +YP YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KP
Sbjct: 162 RLDVPVDKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGY 221
Query: 156 SE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
E LH+LVEAE P+ L+ A ++E LL+PVDE L+ +K+QQLRELA +NGT+
Sbjct: 222 EHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTL 281
Query: 210 RDE 212
R+E
Sbjct: 282 REE 284
>Medtr2g005590.3 | RNA-binding KH domain protein | HC |
chr2:223787-220586 | 20130731
Length = 312
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 7/124 (5%)
Query: 96 KLYIPMKEYPG-YNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPD 154
+L +P+ +YP YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KP
Sbjct: 162 RLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG 221
Query: 155 PSE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGT 208
E LH+LVEAE P+ L+ A ++E LL+PVDE L+ +K+QQLRELA +NGT
Sbjct: 222 YEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGT 281
Query: 209 IRDE 212
+R+E
Sbjct: 282 LREE 285
>Medtr2g005590.1 | RNA-binding KH domain protein | HC |
chr2:223787-220586 | 20130731
Length = 312
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 7/124 (5%)
Query: 96 KLYIPMKEYPG-YNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPD 154
+L +P+ +YP YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KP
Sbjct: 162 RLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG 221
Query: 155 PSE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGT 208
E LH+LVEAE P+ L+ A ++E LL+PVDE L+ +K+QQLRELA +NGT
Sbjct: 222 YEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGT 281
Query: 209 IRDE 212
+R+E
Sbjct: 282 LREE 285
>Medtr7g074100.1 | RNA-binding KH domain protein | HC |
chr7:27677743-27671597 | 20130731
Length = 281
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 119/210 (56%), Gaps = 15/210 (7%)
Query: 13 LNSRLLEISRMLQS-GLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQ-- 69
LN +L +S ML + G DR + RSPSP N+ ++ A LQ+ER
Sbjct: 54 LNQEILRVSGMLSNQGFGDFDRLQ-HRSPSPMA-SSNLMSNVSGTGMGAWNSLQQERLCG 111
Query: 70 -EIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKET 128
++ + PA P+ + ++ + L IP+ +P +NF+G ++GPRGN+ KR+E T
Sbjct: 112 PPGMNMDWQSAPA--SPSSFTVKRILR-LEIPVDTFPNFNFVGRLLGPRGNSLKRVEATT 168
Query: 129 GAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETPD-----ALEAAAGMVEK 182
G ++ IRGKGS+K+ + K +P NE+LH+L+EA+ P L A ++E+
Sbjct: 169 GCRVYIRGKGSIKDPEKEDKLRGRPGYEHLNENLHILIEADLPANVVDIRLRQAQEIIEE 228
Query: 183 LLQPVDEVLNEHKRQQLRELAALNGTIRDE 212
LL+PVDE + KRQQLRELA LN R+E
Sbjct: 229 LLKPVDESQDFIKRQQLRELALLNSNFREE 258
>Medtr8g006605.1 | RNA-binding KH domain protein | HC |
chr8:744315-740918 | 20130731
Length = 276
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K +P
Sbjct: 131 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEEKLRGRPGY 190
Query: 156 SE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
NE LH+L+EA+ P L A ++E+LL+PVDE + KRQQLRELA LN +
Sbjct: 191 EHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDESEDFIKRQQLRELALLNSNL 250
Query: 210 RDE 212
R+E
Sbjct: 251 REE 253
>Medtr8g006580.1 | RNA-binding KH domain protein | HC |
chr8:707473-703207 | 20130731
Length = 276
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K +P
Sbjct: 131 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEEKLRGRPGY 190
Query: 156 SE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
NE LH+L+EA+ P L A ++E+LL+PVDE + KRQQLRELA LN +
Sbjct: 191 EHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDESEDFIKRQQLRELALLNSNL 250
Query: 210 RDE 212
R+E
Sbjct: 251 REE 253
>Medtr8g005550.1 | RNA-binding KH domain protein | HC |
chr8:230618-227384 | 20130731
Length = 276
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K +P
Sbjct: 131 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEEKLRGRPGY 190
Query: 156 SE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
NE LH+L+EA+ P L A ++E+LL+PVDE + KRQQLRELA LN +
Sbjct: 191 EHLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDESEDFIKRQQLRELALLNSNL 250
Query: 210 RDE 212
R+E
Sbjct: 251 REE 253
>Medtr8g005430.1 | RNA-binding KH domain protein | HC |
chr8:868473-864902 | 20130731
Length = 275
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++ R
Sbjct: 131 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDQEKLRGRPGYE 190
Query: 156 SENEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIR 210
NE LH+L+EA+ P L A ++E+LL+PVDE + KRQQLRELA LN +R
Sbjct: 191 HLNEPLHILIEADLPANVVDMRLRQAQEIIEELLKPVDESEDFIKRQQLRELALLNSNLR 250
Query: 211 DE 212
+E
Sbjct: 251 EE 252
>Medtr5g075710.1 | RNA-binding KH domain protein | HC |
chr5:32222823-32219192 | 20130731
Length = 281
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++ +P
Sbjct: 135 RLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGF 194
Query: 156 SE-NEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
NE LH+L+EAE P L A ++E+LL+PVDE + +KRQQLRELA LN +
Sbjct: 195 EHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSF 254
Query: 210 RDE 212
R+E
Sbjct: 255 REE 257
>Medtr5g075710.3 | RNA-binding KH domain protein | HC |
chr5:32222391-32219192 | 20130731
Length = 266
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 10/125 (8%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++ L+ P
Sbjct: 120 RLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKD--FDKEELLRGRP 177
Query: 156 ---SENEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNG 207
NE LH+L+EAE P L A ++E+LL+PVDE + +KRQQLRELA LN
Sbjct: 178 GFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNS 237
Query: 208 TIRDE 212
+ R+E
Sbjct: 238 SFREE 242
>Medtr3g010220.1 | RNA-binding KH domain protein | HC |
chr3:2351169-2345557 | 20130731
Length = 293
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 85/123 (69%), Gaps = 6/123 (4%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
++ IP+ +P +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ ++ KP
Sbjct: 147 RVDIPVDSFPNFNFVGRLLGPRGNSLKRVEANTECRVLIRGRGSIKDTAREEMMRGKPGY 206
Query: 156 SE-NEDLHVLVEAETP----DA-LEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 209
NE LH+LVEAE P DA L A ++E LL+PV+E + +K+QQLRELA +NGT+
Sbjct: 207 EHLNEPLHILVEAELPAEIIDARLMQAREILEDLLRPVEESHDFYKKQQLRELAMINGTL 266
Query: 210 RDE 212
R+E
Sbjct: 267 REE 269
>Medtr5g075710.2 | RNA-binding KH domain protein | HC |
chr5:32222712-32219192 | 20130731
Length = 244
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 10/125 (8%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++ L+ P
Sbjct: 98 RLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKD--FDKEELLRGRP 155
Query: 156 ---SENEDLHVLVEAETPD-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNG 207
NE LH+L+EAE P L A ++E+LL+PVDE + +KRQQLRELA LN
Sbjct: 156 GFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNS 215
Query: 208 TIRDE 212
+ R+E
Sbjct: 216 SFREE 220
>Medtr3g083770.1 | RNA-binding KH domain protein | HC |
chr3:37796169-37790828 | 20130731
Length = 804
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 26/190 (13%)
Query: 9 EIQALNSRLLEISRMLQS---------GLPLDDRPEGARSPSPEPIYDNMGIRINTREYR 59
++ AL R+ +IS+ML+S PL+D GA G +IN+++
Sbjct: 94 KVLALQIRVDQISKMLESENPEIVDTQNSPLEDENPGA---------SKAGSQINSKK-- 142
Query: 60 ARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGN 119
E L+ E++E I +I+K +P++KPP ++P + + +P++EYPGY F+GLI G G+
Sbjct: 143 -SEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPVQEYPGYKFVGLIYGTEGD 201
Query: 120 TQKRMEKETGAKIVIRGK--GSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDALEAAA 177
QKR+EKETG KI I G + ++G ++ D++ +++HV + A++ D ++AA
Sbjct: 202 NQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQ---CGYQEMHVNISADSFDKVDAAI 258
Query: 178 GMVEKLLQPV 187
++E L+ V
Sbjct: 259 SIIELLISSV 268
>Medtr3g083770.2 | RNA-binding KH domain protein | HC |
chr3:37796223-37790828 | 20130731
Length = 803
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 109/190 (57%), Gaps = 27/190 (14%)
Query: 9 EIQALNSRLLEISRMLQS---------GLPLDDRPEGARSPSPEPIYDNMGIRINTREYR 59
++ AL R+ +IS+ML+S PL+D GA G +IN++
Sbjct: 94 KVLALQIRVDQISKMLESENPEIVDTQNSPLEDENPGA---------SKAGSQINSKS-- 142
Query: 60 ARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGN 119
E L+ E++E I +I+K +P++KPP ++P + + +P++EYPGY F+GLI G G+
Sbjct: 143 --EMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPVQEYPGYKFVGLIYGTEGD 200
Query: 120 TQKRMEKETGAKIVIRG--KGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDALEAAA 177
QKR+EKETG KI I G + ++G ++ D++ +++HV + A++ D ++AA
Sbjct: 201 NQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQ---CGYQEMHVNISADSFDKVDAAI 257
Query: 178 GMVEKLLQPV 187
++E L+ V
Sbjct: 258 SIIELLISSV 267
>Medtr3g062640.1 | RNA-binding KH domain protein | HC |
chr3:28307380-28305002 | 20130731
Length = 237
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 96 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDP 155
+L IP YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ L ++ L+ P
Sbjct: 136 RLDIPKDGYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD--LDKEELLRGRP 193
Query: 156 ---SENEDLHVLVEAETPD-----ALEAAAGMVEKLLQPV 187
+++LH+L+EAE P L A ++E+LL+PV
Sbjct: 194 GYEHLSDELHILIEAELPANIVDVRLRHAQEIIEELLKPV 233
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+Y+ L +++ L Q+F + G+IV A+V+ DR TG S+G+GFV +D T N+AI A+
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 393 NGYRLEGRTIAV 404
+G LEGRTI V
Sbjct: 268 DGQSLEGRTIRV 279
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
+D L++G P ++ + L LF Q G + +A+VI +R T LS+G+GFV + + A +A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 389 ILAMNGYRLEGRTIAV 404
+ NGY GR++ V
Sbjct: 167 VEKFNGYDYNGRSLVV 182
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 334 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 393
++G L +++ L + F Q+GEIV +K+I DR TG S+G+GFV +A+ N+AI AMN
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 394 GYRLEGRTIAV 404
G L+GR I V
Sbjct: 69 GQDLDGRNITV 79
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 334 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 393
++G L +++ L + F Q+GEIV +K+I DR TG S+G+GFV +A+ N+AI AMN
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 394 GYRLEGRTIAV 404
G L+GR I V
Sbjct: 69 GQDLDGRNITV 79
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
TNL++ L + L + FQ+FGE+V A+V+ DR++G SKG+GFVKYA + A I
Sbjct: 50 STNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGI 109
Query: 390 LAMNGYRLEGRTI 402
M+G LEG I
Sbjct: 110 EGMDGKFLEGWVI 122
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 334 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 393
++G L + + L + F Q+GEI+ +K+I DR TG S+G+GFV +AD +AI MN
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 394 GYRLEGRTIAV 404
G ++GR I V
Sbjct: 71 GQDMDGRNITV 81
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
NL+I ++P D L FQ FG ++ AKV D+ TG+SK +GFV Y A +AI
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 391 AMNGYRLEGRTIAVR 405
MNG +L G+ + V+
Sbjct: 408 MMNGCQLGGKKLKVQ 422
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
NL+I ++P D L FQ FG ++ AKV D+ TG+SK +GFV Y A +AI
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 391 AMNGYRLEGRTIAVR 405
MNG +L G+ + V+
Sbjct: 409 MMNGCQLGGKKLKVQ 423
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%)
Query: 326 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMA 385
+ + L+IG + + ++ GL + F ++G+++ AK+I DR TG S+G+GF+ +A A
Sbjct: 35 RSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEA 94
Query: 386 NNAILAMNGYRLEGRTIAV 404
++A+ AM+ L+GRT+ V
Sbjct: 95 SSALQAMDNKELDGRTVRV 113
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%)
Query: 326 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMA 385
+ + L+IG + + ++ GL + F ++G+++ AK+I DR TG S+G+GF+ +A A
Sbjct: 35 RSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEA 94
Query: 386 NNAILAMNGYRLEGRTIAV 404
++A+ AM+ L+GRT+ V
Sbjct: 95 SSALQAMDNKELDGRTVRV 113
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G L T+ + L Q FQ+ G +V A+V+ D TG S+GYGFV YA + + A+ M
Sbjct: 206 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 265
Query: 393 NGYRLEGRTIAV 404
+ LEGRT+ V
Sbjct: 266 DNVELEGRTLRV 277
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 334 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 393
Y+G LP +++ L QLF + G++ A+V+ DR TG S+G+GFV ++ N+AI A++
Sbjct: 219 YVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALD 278
Query: 394 GYRLEGRTIAV 404
G GR I V
Sbjct: 279 GQSFNGRAIRV 289
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
+D +++G LP ++ + L QLF+Q G + +A+VI +R T S+G+GFV + A
Sbjct: 120 EDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 389 ILAMNGYRLEGRTIAV 404
+ +G+ L+GR + V
Sbjct: 180 VNKFSGFELDGRLLTV 195
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 50/74 (67%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
T L+IG + + +++ L + F ++GE++ A++I DR TG S+G+GF+ + + A++AI
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 391 AMNGYRLEGRTIAV 404
A++G L GR + V
Sbjct: 102 ALDGQDLHGRRVRV 115
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
+D L++G P ++ + L LF Q G + +A+VI +R T LS+G+GFV + + A +A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 389 ILAMNGYRLEGRTIAV 404
+ NGY GR++ V
Sbjct: 167 VEKFNGYDYNGRSLVV 182
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+Y+ L +++ L Q+F + G+IV A+V+ DR TG S+G+GFV +D T N+AI A+
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 393 NG 394
+G
Sbjct: 268 DG 269
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 326 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMA 385
+ + LY+G + + +D GL + F ++G+++ A+VI DR G SKG+GFV +A A
Sbjct: 35 RSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEA 94
Query: 386 NNAILAMNGYRLEGRTIAV 404
+ A+ AM+ L GRT+ V
Sbjct: 95 SAALQAMDNQELHGRTVRV 113
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 334 YIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMN 393
++G L + L Q F +FGEI +KVI DR TG S+G+GFV +A+ +AI MN
Sbjct: 11 FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMN 70
Query: 394 GYRLEGRTIAV 404
G ++GR I V
Sbjct: 71 GQDIDGRNITV 81
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + +I +F Q+GE+V +++D+ TG SKG+ F+ Y D N A+ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 393 NGYRLEGRTIAV 404
NG ++ GR I V
Sbjct: 98 NGAQVSGRIIRV 109
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 328 IDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANN 387
+D L+IG + +D L Q FQ FG++V A ++KDR TG ++G+GFV +AD ++A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 388 AILAMNGYRLEGRTIAVR 405
+ M + ++GRT+ +
Sbjct: 61 VV--MEKHVIDGRTVEAK 76
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 328 IDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANN 387
+D L+IG + +D L Q FQ FG++V A ++KDR TG ++G+GFV +AD ++A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 388 AILAMNGYRLEGRTIAVR 405
+ M + ++GRT+ +
Sbjct: 61 VV--MEKHVIDGRTVEAK 76
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 328 IDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANN 387
+D L+IG + +D L Q FQ FG++V A ++KDR TG ++G+GFV +AD ++A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 388 AILAMNGYRLEGRTIAVR 405
+ M + ++GRT+ +
Sbjct: 61 VV--MEKHVIDGRTVEAK 76
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 326 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMA 385
+ + + L+IG L ++D L F +G++V A+VI DR TG S+G+GFV + A
Sbjct: 31 RHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 386 NNAILAMNGYRLEGRTIAV 404
+A L+M+G L GR I V
Sbjct: 91 TSA-LSMDGQDLNGRNIRV 108
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
+T L++G + ++ L F ++G+++ A++I DR +G SKG+GFV Y + A++AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 390 LAMNGYRLEGRTIAVR 405
A++G L GR + V
Sbjct: 103 QALDGQDLYGRRVGVN 118
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
+T L++G + ++ L F ++G+++ A++I DR +G SKG+GFV Y + A++AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 390 LAMNGYRLEGRTIAVR 405
A++G L GR + V
Sbjct: 103 QALDGQDLYGRRVGVN 118
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 325 KKEID-DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMA-KVIKDRMTGLSKGYGFVKYADI 382
KK +D NL+IG L P +++ L F FG IV K+++D TG S+G+GF+ Y
Sbjct: 105 KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF 164
Query: 383 TMANNAILAMNGYRLEGRTIAV 404
+++AI AMNG L R I V
Sbjct: 165 EASDSAIEAMNGQYLCNRQITV 186
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
D Y+G L P + ++ L +LF Q G +V V KDR+T +GYGFV++ A+ AI
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 390 LAMNGYRLEGRTIAV 404
+N +L G+ I V
Sbjct: 84 KVLNMIKLYGKPIRV 98
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G LP + + +L + FG + ++KDR TG SKGY F YAD+ + + A A+
Sbjct: 362 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACAAL 421
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 422 NGIKMGDKTLTVR 434
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
DD L+ G L + DD L + F +F MA+V++D+ TG +KGYGF+ +A+ A
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 389 ILAMNGYRLEGRTIAVR 405
+ MNG + R I +R
Sbjct: 190 LKEMNGKYVGNRPIKLR 206
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
+ ++IG LP DD + +L + G+IV K+IKDR TG SKGY FV Y +A AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 391 AMNGYRLEGRTI 402
++ +G+T+
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
+ ++IG LP DD + +L + G+IV K+IKDR TG SKGY FV Y +A AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 391 AMNGYRLEGRTI 402
++ +G+T+
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
+ ++IG LP DD + +L + G+IV K+IKDR TG SKGY FV Y +A AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 391 AMNGYRLEGRTI 402
++ +G+T+
Sbjct: 164 DIHNKEFKGKTL 175
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
D +++G L +++ L LF + G+++ AKVI DR +G S+G+GFV ++ ++AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 390 LAMNGYRLEGRTIAV 404
++G L GR I V
Sbjct: 255 RTLDGADLNGRAIRV 269
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G LP +++ L ++F+ G++ M +VI D+ TG S+G+GFV + A +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 393 NGYRLEGRTIAV 404
NGY ++GR + V
Sbjct: 146 NGYVVDGRELRV 157
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAI 389
D +++G L +++ L LF + G+++ AKVI DR +G S+G+GFV ++ ++AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 390 LAMNGYRLEGRTIAV 404
++G L GR I V
Sbjct: 255 RTLDGADLNGRAIRV 269
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G LP +++ L ++F+ G++ M +VI D+ TG S+G+GFV + A +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 393 NGYRLEGRTIAV 404
NGY ++GR + V
Sbjct: 146 NGYVVDGRELRV 157
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 324 VKKEIDDTN---LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYA 380
V K + DT +++G L + D L + F QFG+I+ A VI DR TG SKGYGFV +
Sbjct: 16 VPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK 75
Query: 381 DITMANNAILA 391
D N+AILA
Sbjct: 76 D---PNSAILA 83
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 324 VKKEIDDTN---LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYA 380
V K + DT +++G L + D L + F QFG+I+ A VI DR TG SKGYGFV +
Sbjct: 16 VPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK 75
Query: 381 DITMANNAILA 391
D N+AILA
Sbjct: 76 D---PNSAILA 83
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 324 VKKEIDDTN---LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYA 380
V K + DT +++G L + D L + F QFG+I+ A VI DR TG SKGYGFV +
Sbjct: 16 VPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK 75
Query: 381 DITMANNAILA 391
D N+AILA
Sbjct: 76 D---PNSAILA 83
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 324 VKKEIDDTN---LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYA 380
V K + DT +++G L + D L + F QFG+I+ A VI DR TG SKGYGFV +
Sbjct: 16 VPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFK 75
Query: 381 DITMANNAILA 391
D N+AILA
Sbjct: 76 D---PNSAILA 83
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 332 NLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILA 391
+L + + + +++ L + F ++GE++ A++I DR TG S+G+GF+ + + A++AI A
Sbjct: 51 HLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 110
Query: 392 MNGYRLEGRTIAV 404
++G L GR + V
Sbjct: 111 LDGQDLHGRRVRV 123
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G L + L F +G++V AKVI DR++ SKGYGFV +A A AI M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 393 NGYRLEGRTIAV 404
N L GR + V
Sbjct: 94 NEKALNGRVVFV 105
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 470 NGIKMGDKTLTVR 482
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 472 NGIKMGDKTLTVR 484
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 472 NGIKMGDKTLTVR 484
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 470 NGIKMGDKTLTVR 482
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 472 NGIKMGDKTLTVR 484
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 470 NGIKMGDKTLTVR 482
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P + + +L + FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 472 NGIKMGDKTLTVR 484
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++ L + + L ++F FGE+V +++ DR L KGYG+V + A A+L M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 393 NGYRLEGRTIAVR 405
+G +++G + R
Sbjct: 162 DGAQIDGNVVKAR 174
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++ L + L + F++FGE+ +V+ DR++G SKG+G+V+YA A I M
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 393 NGYRLEGRTI 402
+G LEG +
Sbjct: 106 DGKFLEGWIV 115
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G LP + + +L Q FG + +++D+ TG SKGYGF Y D + + A A+
Sbjct: 285 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 344
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 345 NGLKMGDKTLTVR 357
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G LP + + +L Q FG + +++D+ TG SKGYGF Y D + + A A+
Sbjct: 300 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 359
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 360 NGLKMGDKTLTVR 372
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 332 NLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILA 391
N+++ L ++++ GL +F++FG I+ +KV+ G SKGYGFV++ AN AI
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIER 157
Query: 392 MNGYRLEGRTIAV 404
+NGY + + I V
Sbjct: 158 LNGYLVGDKQIYV 170
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 330 DTNLYIGYLPPTLEDDGLIQLFQ-QFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
D ++++G L P + D L + F+ +G + AKV+ D TG SKGYGFVK++D + N A
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 389 ILAMNGYRLEGR 400
+ MNG R
Sbjct: 167 MSEMNGVYCSTR 178
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G LP + + +L Q FG + +++D+ TG SKGYGF Y D + + A A+
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 240 NGLKMGDKTLTVR 252
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L+I L D+ L + F FG+++ AKVI DR +G SKG+ FV Y+ I A A M
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 393 NGYRLEGRTIAV 404
N L+G I V
Sbjct: 97 NAKFLDGWVIFV 108
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G LP + + +L Q FG + +++D+ TG SKGYGF Y D + + A A+
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 393 NGYRLEGRTIAVR 405
NG ++ +T+ VR
Sbjct: 197 NGLKMGDKTLTVR 209
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 326 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMA 385
+ + + L+IG L ++D L F +G++V A+VI DR TG S+G+GFV + A
Sbjct: 31 RHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 386 NNAILAMNG 394
+A L+M+G
Sbjct: 91 TSA-LSMDG 98
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
++T +++G L P + DD L Q+F Q+GE+V K+ K GFV+++D + A A
Sbjct: 259 NNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPS------GKRCGFVQFSDRSCAEEA 312
Query: 389 ILAMNGYRLEGRTI 402
I +NG L G+ +
Sbjct: 313 IRVLNGTLLGGQNV 326
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 324 VKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIT 383
K + D L++G + +D L F ++G+++ + + DR T + +G+GFV ++DI+
Sbjct: 3 FKMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDIS 62
Query: 384 MANNAILAMNGYRLEGRTIAVR 405
A+NA+ + + + GR + VR
Sbjct: 63 SAHNAL--QDTHAILGRKVEVR 82
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 328 IDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANN 387
++++LY+G L + D L LF Q ++ +V +D+MT S GYG+V Y++ A N
Sbjct: 22 FENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAAN 81
Query: 388 AILAMNGYRLEGRTIAV 404
A+ +N L G+ I +
Sbjct: 82 AMENLNYVPLNGKPIRI 98
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
+++G +P ++ L ++ ++ G ++ +++ DR TG KGYGF +Y D A +A +
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 393 NGYRLEGRTIAV 404
GY + GR + V
Sbjct: 91 QGYEINGRQLRV 102
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G LP +L L QLF + G +V +++ D +T S+G+ FV ++ A AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 393 NGYRLEGRTIAV 404
+G + GR I V
Sbjct: 170 DGTTVGGRAIKV 181
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 333 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAM 392
L++G LP +L L QLF + G +V +++ D +T S+G+ FV ++ A AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 393 NGYRLEGRTIAV 404
+G + GR I V
Sbjct: 170 DGTTVGGRAIKV 181
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
T L+I L + L F+Q G+I+ KVI + TG SKGYGFV++ T A A
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 391 AMNGYRLEGRTIAV 404
++G ++GR I V
Sbjct: 93 ELHGQIVDGRRIRV 106
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
DD+++Y+G LP D+ + +F +G I+ K+I D+ T + K Y FV + + A +A
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRT-IGKCYCFVTFTNPRSAIDA 63
Query: 389 ILAMNGYRLEGRTIAV 404
I MNG + GR + V
Sbjct: 64 INDMNGRTINGRVVKV 79
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 EIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMAN 386
E D L+IG + +++ L + F +GE++ A +++DR TG ++G+GFV ++D +A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 387 NAILAMNGYRLEGRTIAVR 405
I+ + + ++GRT+ +
Sbjct: 62 RVII--DKHIIDGRTVEAK 78
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 EIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMAN 386
E D L+IG + +++ L + F +GE++ A +++DR TG ++G+GFV ++D +A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 387 NAILAMNGYRLEGRTIAVR 405
I+ + + ++GRT+ +
Sbjct: 62 RVII--DKHIIDGRTVEAK 78
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 331 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIL 390
T+LY+G L + D L LF Q G++V +V +D T S GYG+V Y++ A A+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 391 AMNGYRLEGRTIAV 404
+N L R I +
Sbjct: 94 VLNFTPLNNRPIRI 107
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 329 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNA 388
DD+++Y+G LP D+ + +F +G I+ K+I D+ T + K Y FV + + A +A
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRT-IGKCYCFVTFTNPRSAIDA 63
Query: 389 ILAMNGYRLEGRTIAV 404
I MNG + GR + V
Sbjct: 64 INDMNGRTINGRVVKV 79