Miyakogusa Predicted Gene

Lj3g3v3725520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3725520.1 Non Characterized Hit- tr|I1HU49|I1HU49_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.97,3e-19,SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA POLYMERASE
III,RNA polymerase III Rpc4; RNA_pol_Rpc4,RNA ,CUFF.46233.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036455.1 | RNA polymerase III RPC4 | HC | chr4:13119924-1...   111   2e-25
Medtr1g080300.1 | RNA polymerase III RPC4 | HC | chr1:35654599-3...    99   1e-21

>Medtr4g036455.1 | RNA polymerase III RPC4 | HC |
           chr4:13119924-13123885 | 20130731
          Length = 310

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 85/117 (72%), Gaps = 4/117 (3%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           ++FF+LP  LP  K+ V+ KGKEK  ++  + +  K     + +LP G++GKM +YKSGA
Sbjct: 191 LIFFKLPTVLPCVKQPVNSKGKEKIGTSKVSAKAKK--ASNLLELPSGYMGKMQVYKSGA 248

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELS--KKVVVTPDLDSLEL 115
           +KLK+GE LYDVSPG+K    QDVVA+NTA+K+  V+G+++   K VVTPD+D+++L
Sbjct: 249 VKLKIGETLYDVSPGTKTILDQDVVAINTAKKNYSVVGKVTVDAKAVVTPDIDAIDL 305


>Medtr1g080300.1 | RNA polymerase III RPC4 | HC |
           chr1:35654599-35658519 | 20130731
          Length = 288

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 5/111 (4%)

Query: 2   LFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGAI 61
            F +LP  +P+ KK     GK+K       G       C + DLP G +GKML+YKSG +
Sbjct: 173 FFMKLPPVIPMIKKP-DADGKDKRPG----GYRGAAKLCRLNDLPPGLIGKMLVYKSGKV 227

Query: 62  KLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDS 112
           KLKLG  LYDVS G  C FAQ+  A+NTAQK C  LGE++K   VTPD+D+
Sbjct: 228 KLKLGNTLYDVSSGMNCIFAQEFAAINTAQKFCSALGEINKFATVTPDIDA 278