Miyakogusa Predicted Gene

Lj3g3v3714370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3714370.1 Non Characterized Hit- tr|I3T8H3|I3T8H3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,Mago nashi protein; Mago_nashi,Mago
nashi protein; no des,CUFF.46247.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g118110.1 | mago nashi family, integral exon junction comp...   306   5e-84
Medtr3g109260.1 | mago nashi family, integral exon junction comp...   238   1e-63
Medtr3g118110.2 | mago nashi family, integral exon junction comp...   146   5e-36

>Medtr3g118110.1 | mago nashi family, integral exon junction complex
           protein | HC | chr3:55279593-55281242 | 20130731
          Length = 214

 Score =  306 bits (784), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 146/151 (96%), Positives = 149/151 (98%)

Query: 1   MATEEENNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA 60
           M +EEEN EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA
Sbjct: 64  MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA 123

Query: 61  VLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSAD 120
           VLRECRRII++SEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSAD
Sbjct: 124 VLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSAD 183

Query: 121 PEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 151
           PEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Sbjct: 184 PEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 214


>Medtr3g109260.1 | mago nashi family, integral exon junction complex
           protein | HC | chr3:50507371-50505423 | 20130731
          Length = 150

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 136/151 (90%), Gaps = 3/151 (1%)

Query: 1   MATEEENNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA 60
           M +E+EN  FYLRY++GHKGK GHEFLEFEF  +GKLRYANNSNYKNDTIIRKEVY++PA
Sbjct: 1   MGSEKENGVFYLRYHIGHKGKHGHEFLEFEFTDNGKLRYANNSNYKNDTIIRKEVYVSPA 60

Query: 61  VLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSAD 120
           V+ E RR++++SEIMKEDD+NWPEP+RVGRQELEIVMGNEHISF T+KIG++ +V++S  
Sbjct: 61  VIHEWRRMVSDSEIMKEDDHNWPEPNRVGRQELEIVMGNEHISFITTKIGAVAEVENS-- 118

Query: 121 PEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 151
            EGL+ F++LVQDL+CFV +LISLHFKIKPI
Sbjct: 119 -EGLQNFHWLVQDLRCFVLNLISLHFKIKPI 148


>Medtr3g118110.2 | mago nashi family, integral exon junction complex
           protein | HC | chr3:55279593-55281143 | 20130731
          Length = 170

 Score =  146 bits (369), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%)

Query: 1   MATEEENNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA 60
           M +EEEN EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA
Sbjct: 64  MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPA 123

Query: 61  VLRECRRIIAESEIMKEDDNNWPEPD 86
           VLRECRRII++SE+        P P+
Sbjct: 124 VLRECRRIISDSEVFFSILFTNPNPN 149