Miyakogusa Predicted Gene

Lj3g3v3690070.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3690070.2 tr|B9GIW6|B9GIW6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_752084 PE=4
SV=1,45.66,0.000004,seg,NULL,CUFF.46219.2
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g037575.1 | hypothetical protein | HC | chr4:13826788-1383...   144   7e-35
Medtr4g037575.2 | hypothetical protein | HC | chr4:13826774-1383...   144   7e-35

>Medtr4g037575.1 | hypothetical protein | HC |
           chr4:13826788-13833833 | 20130731
          Length = 1256

 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 44  NATIQHLSQAQVHPHQPVTPNVQHQVPNPSSHAVTGHHSYPQSLPHQNMQPGGPQQTMHM 103
           NA +QH SQ Q+  HQP+ PNVQ QV N  SHAVTG+HSYPQ LPHQNMQ G PQ  MH+
Sbjct: 407 NAPVQHPSQPQMQSHQPMNPNVQPQVQNAMSHAVTGNHSYPQPLPHQNMQMGAPQSNMHL 466

Query: 104 HPQSGPQFQAQHSVQMQNQFPQQIPAMRPNQSHAMFPNQQ----HQTVQGQSAPSLHQQQ 159
           +PQSGPQ   QHSVQMQNQFP Q P MRPNQSHAM+PNQQ       VQGQ+ P L QQQ
Sbjct: 467 NPQSGPQLPGQHSVQMQNQFPPQTPMMRPNQSHAMYPNQQPGFMPSAVQGQNTPPLQQQQ 526

Query: 160 PVYAHNQQPGQIGQRPIXXXXXXXXXXXXXXXXXXXXXSHLRPQGPAQSI 209
             Y  NQ  GQ  QRPI                     SH RPQGP  S 
Sbjct: 527 -GYTPNQPTGQTNQRPILQPGQQILPQQPFSQHQMPMPSHPRPQGPVHSF 575


>Medtr4g037575.2 | hypothetical protein | HC |
           chr4:13826774-13831852 | 20130731
          Length = 1253

 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 44  NATIQHLSQAQVHPHQPVTPNVQHQVPNPSSHAVTGHHSYPQSLPHQNMQPGGPQQTMHM 103
           NA +QH SQ Q+  HQP+ PNVQ QV N  SHAVTG+HSYPQ LPHQNMQ G PQ  MH+
Sbjct: 407 NAPVQHPSQPQMQSHQPMNPNVQPQVQNAMSHAVTGNHSYPQPLPHQNMQMGAPQSNMHL 466

Query: 104 HPQSGPQFQAQHSVQMQNQFPQQIPAMRPNQSHAMFPNQQ----HQTVQGQSAPSLHQQQ 159
           +PQSGPQ   QHSVQMQNQFP Q P MRPNQSHAM+PNQQ       VQGQ+ P L QQQ
Sbjct: 467 NPQSGPQLPGQHSVQMQNQFPPQTPMMRPNQSHAMYPNQQPGFMPSAVQGQNTPPLQQQQ 526

Query: 160 PVYAHNQQPGQIGQRPIXXXXXXXXXXXXXXXXXXXXXSHLRPQGPAQSI 209
             Y  NQ  GQ  QRPI                     SH RPQGP  S 
Sbjct: 527 -GYTPNQPTGQTNQRPILQPGQQILPQQPFSQHQMPMPSHPRPQGPVHSF 575