Miyakogusa Predicted Gene

Lj3g3v3690050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3690050.1 CUFF.46209.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g037750.1 | DNA-directed RNA polymerase II subunit RPB11-l...   227   2e-60
Medtr6g004540.1 | DNA-directed RNA polymerase II subunit RPB11-l...   154   1e-38
Medtr7g020830.1 | DNA-directed RNA polymerase | HC | chr7:649675...    55   1e-08

>Medtr4g037750.1 | DNA-directed RNA polymerase II subunit RPB11-like
           protein | HC | chr4:13948941-13951486 | 20130731
          Length = 116

 Score =  227 bits (579), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/116 (90%), Positives = 113/116 (97%)

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
           MNAPDRYERFVVPEGTKKV+YERDTKIINAASFTIEREDHTIGNILRMQLH+DPNVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVAYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY 116
           YKLPHPLQYKII+RIHT SQSSPMQAYNQSINDLDKELD LK+ FEA++L+FS+DY
Sbjct: 61  YKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 116


>Medtr6g004540.1 | DNA-directed RNA polymerase II subunit
          RPB11-like protein | HC | chr6:322224-323418 | 20130731
          Length = 76

 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/75 (94%), Positives = 74/75 (98%)

Query: 1  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
          MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGN+LRMQLH+DPNVLFAG
Sbjct: 1  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNVLRMQLHKDPNVLFAG 60

Query: 61 YKLPHPLQYKIIVRI 75
          YKLPHPLQYKII R+
Sbjct: 61 YKLPHPLQYKIISRV 75


>Medtr7g020830.1 | DNA-directed RNA polymerase | HC |
           chr7:6496753-6500520 | 20130731
          Length = 115

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 28  INAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPMQAY 87
           ++ ++F++  EDHT  N +R  L++DP V F GY +PHP + ++ VR+ T    +  +  
Sbjct: 9   LSKSTFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTTGDPAS-EVL 67

Query: 88  NQSINDLDKELDHLKNAF 105
                DL     H+++ F
Sbjct: 68  KDGCQDLMLMCQHVRSTF 85