Miyakogusa Predicted Gene

Lj3g3v3689900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3689900.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,86.46,0,seg,NULL; coiled-coil,NULL; SKIP_SNW,SKI-interacting
protein SKIP, SNW domain; NUCLEAR PROTEIN SKIP-,CUFF.46200.1
         (603 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030450.1 | GAMYB-binding protein | HC | chr2:11456477-114...   902   0.0  
Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351...   144   2e-34
Medtr7g109770.1 | hypothetical protein | LC | chr7:44945332-4494...    84   5e-16

>Medtr2g030450.1 | GAMYB-binding protein | HC |
           chr2:11456477-11453867 | 20130731
          Length = 613

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/613 (77%), Positives = 502/613 (81%), Gaps = 12/613 (1%)

Query: 1   MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEEKASAAIKQKQVPPYLKRAGFVPR 60
           MAAL ELLP+PKSS+ TYYDHSNDPWFKQRFT++EEEK SAAI  K VPPYLKR+GFVPR
Sbjct: 1   MAALKELLPEPKSSTTTYYDHSNDPWFKQRFTATEEEK-SAAIAPKIVPPYLKRSGFVPR 59

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
           +VEDFG+GGAFPEIHVAQYPLDMGR+K+SKPGSKILPVTVDAHGNVAYDAIVKQNENAKK
Sbjct: 60  KVEDFGEGGAFPEIHVAQYPLDMGRNKNSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 119

Query: 121 IVYTQQKDLIPKILKNXXXXXXXXXXXX-VQKEIDETMQETKAALEKIVNVRLSAAQPKN 179
           IVYTQ KDLIPKILKN              Q+EIDETM+ETKAALEKIVNVRLSAAQPKN
Sbjct: 120 IVYTQHKDLIPKILKNDGDDEMEDGEDEDAQREIDETMEETKAALEKIVNVRLSAAQPKN 179

Query: 180 VPKQSSDAKYIKYKPSQQSAAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPKAXXXXXX 239
           VPK +SD+KYIKYKPSQQ+AAFNSGA+ERVIRM+EMPVDPLEPPKFKHKRVPKA      
Sbjct: 180 VPKHNSDSKYIKYKPSQQNAAFNSGARERVIRMVEMPVDPLEPPKFKHKRVPKASGSPPV 239

Query: 240 XXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL 299
                     TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL
Sbjct: 240 PVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL 299

Query: 300 SESLYVAEQKAREAVAMRSKVXXXXXXXXXXXXXXXXXXXAQKARSERTGVAPPAAVSFP 359
           SE+LYVAEQKAREAVAMRSKV                   AQKARSER GVAPPAA    
Sbjct: 300 SEALYVAEQKAREAVAMRSKVQKEMLLKEKERKEQELRALAQKARSERIGVAPPAAAVPV 359

Query: 360 -PEKSSVDDADMRVDYDHPRDRE---------KNFPKESREEREDXXXXXXXXXXXXXXX 409
             EKS VDD DMRVDYDH  DR          KN+PKESREE+E+               
Sbjct: 360 VSEKSGVDDGDMRVDYDHRGDRGDRDREREREKNYPKESREEKEERLGREKIRMERRKER 419

Query: 410 XXXXXXXAKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDKGMSSG 469
                  AKDAAMGKKSKITRDRDRDISEKVALGMA+ K GTEVMYDERLFNQDKGMSSG
Sbjct: 420 EKERRIEAKDAAMGKKSKITRDRDRDISEKVALGMASTKQGTEVMYDERLFNQDKGMSSG 479

Query: 470 FGTDDQYNVYDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSG 529
           F TDDQYNVYDKGLF AQPTLSTLYRPKKDVDNE YGGADEQLEKIMKTDRFKPDK+F+G
Sbjct: 480 FATDDQYNVYDKGLFNAQPTLSTLYRPKKDVDNEAYGGADEQLEKIMKTDRFKPDKSFTG 539

Query: 530 ASERAGPRDRPVEFENEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMKASAGSSMRDGYE 589
            SERA PRDRPVEFE+EEADPFGLDQFLTEVKKGKKAME VGGGGTM+ASAGSSMRD  +
Sbjct: 540 TSERAPPRDRPVEFESEEADPFGLDQFLTEVKKGKKAMENVGGGGTMRASAGSSMRDSSD 599

Query: 590 GGSSRTRIGFERG 602
           GGS RTRIGFERG
Sbjct: 600 GGSGRTRIGFERG 612


>Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351 |
           20130731
          Length = 397

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 90/149 (60%), Gaps = 48/149 (32%)

Query: 417 AKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDKGMSSGFGTDDQY 476
           AKD  MGKK KITRD+DRDISEKVALGM+  K GT+VM+DE+L NQD             
Sbjct: 73  AKDVGMGKKCKITRDKDRDISEKVALGMSYTKQGTQVMHDEKLLNQD------------- 119

Query: 477 NVYDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERA-- 534
                                    NE YGGADEQLEK         DK F+GASERA  
Sbjct: 120 -------------------------NEAYGGADEQLEKT--------DKGFTGASERAPL 146

Query: 535 GPRDRPVEFENEEADPFGLDQFLTEVKKG 563
            PRDRPVEFE++EADPFGLDQFLTEVKKG
Sbjct: 147 TPRDRPVEFESDEADPFGLDQFLTEVKKG 175



 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 1  MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEE 37
          M AL ELLP+PKSS+ATYY HS DPWFKQ FT+++EE
Sbjct: 1  MEALKELLPEPKSSTATYYHHSYDPWFKQLFTTTKEE 37


>Medtr7g109770.1 | hypothetical protein | LC |
           chr7:44945332-44946260 | 20130731
          Length = 289

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 53/84 (63%), Gaps = 26/84 (30%)

Query: 417 AKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDKGMSSGFGTDDQY 476
           A+DAAMGKKS+ITRDRDRDISEK+ LG A+ K GTEV+YDERLFN+DK            
Sbjct: 212 AEDAAMGKKSRITRDRDRDISEKLDLGYASPKHGTEVLYDERLFNEDK------------ 259

Query: 477 NVYDKGLFTAQPTLSTLYRPKKDV 500
                         STL+ PKKDV
Sbjct: 260 --------------STLFTPKKDV 269