Miyakogusa Predicted Gene

Lj3g3v3653450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3653450.1 tr|C7J8U1|C7J8U1_ORYSJ Os11g0146550 protein
OS=Oryza sativa subsp. japonica GN=Os11g0146550 PE=4
SV=,70.31,2e-18,FAMILY NOT NAMED,NULL; GIY-YIG,UvrABC system subunit
C, N-terminal; GIY-YIG endonuclease,UvrABC syst,CUFF.46159.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0003s0480.1 | structure-specific endonuclease subunit SLX1-...   162   9e-41
Medtr0003s0480.2 | structure-specific endonuclease subunit SLX1-...   141   2e-34
Medtr3g466410.1 | endo/excinuclease amino terminal domain protei...    55   2e-08

>Medtr0003s0480.1 | structure-specific endonuclease subunit
           SLX1-like protein | HC | scaffold0003:241172-248944 |
           20130731
          Length = 168

 Score =  162 bits (409), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 87/116 (75%), Gaps = 7/116 (6%)

Query: 1   MRTLCRSFRSMKRPIPNPNLXXXXXXXX-------XXXXXXWCVYLILSTNHPIKTYVGV 53
           MRTL ++FRS+KRPI NP L                     WCVYLILSTNHPIKTYVGV
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSELKPKSESSSWCVYLILSTNHPIKTYVGV 60

Query: 54  TTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSEACAFESKWKVFSRR 109
           TTNFPRRLK+HNG L GGAKASRAGRPWICAC++CGFTNRSEAC FESKWK  SRR
Sbjct: 61  TTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 116


>Medtr0003s0480.2 | structure-specific endonuclease subunit
           SLX1-like protein | HC | scaffold0003:241172-246856 |
           20130731
          Length = 157

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 77/106 (72%), Gaps = 7/106 (6%)

Query: 1   MRTLCRSFRSMKRPIPNPNLXXXXXXXX-------XXXXXXWCVYLILSTNHPIKTYVGV 53
           MRTL ++FRS+KRPI NP L                     WCVYLILSTNHPIKTYVGV
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSELKPKSESSSWCVYLILSTNHPIKTYVGV 60

Query: 54  TTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSEACAF 99
           TTNFPRRLK+HNG L GGAKASRAGRPWICAC++CGFTNRSE  A 
Sbjct: 61  TTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEVEAI 106


>Medtr3g466410.1 | endo/excinuclease amino terminal domain protein |
           HC | chr3:27284013-27280966 | 20130731
          Length = 413

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 38  YLILSTNHPIK--TYVGVTTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSE 95
           YL+ S N   K  TY+G T N  RR++QHNG++  GA  ++  RPW     I GF     
Sbjct: 53  YLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGSGAWRTKKKRPWEMVLCIYGFPTNVA 112

Query: 96  ACAFESKWK 104
           A  FE  W+
Sbjct: 113 ALQFEWAWQ 121