Miyakogusa Predicted Gene
- Lj3g3v3652410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3652410.1 tr|Q3L9F4|Q3L9F4_RHOE4 Conserved hypothetical
membrane protein OS=Rhodococcus erythropolis (strain
P,33.78,4.7,seg,NULL,CUFF.46246.1
(430 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g436060.1 | RNA-binding domain CCCH-type zinc finger prote... 515 e-146
Medtr0005s0130.1 | RNA-binding domain CCCH-type zinc finger prot... 492 e-139
Medtr4g043660.1 | RNA-binding domain CCCH-type zinc finger prote... 492 e-139
Medtr4g043660.2 | RNA-binding domain CCCH-type zinc finger prote... 492 e-139
Medtr5g008900.1 | zinc finger CCCH domain protein | HC | chr5:19... 261 8e-70
Medtr3g056160.1 | RNA-binding domain CCCH-type zinc finger prote... 142 7e-34
Medtr3g056160.2 | RNA-binding domain CCCH-type zinc finger prote... 142 7e-34
Medtr5g094700.1 | RNA-binding domain CCCH-type zinc finger prote... 135 1e-31
>Medtr3g436060.1 | RNA-binding domain CCCH-type zinc finger protein
| HC | chr3:12079943-12084739 | 20130731
Length = 701
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/438 (65%), Positives = 311/438 (71%), Gaps = 15/438 (3%)
Query: 1 MMDQCHE-LLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXM 59
MMDQCHE LLRSKS+QQQRLAAA SQLMA+S FPYS K M+ +
Sbjct: 271 MMDQCHEQLLRSKSLQQQRLAAA-SQLMATSPFPYSPKSMSLLLQQQQLSDSQRAAAAAL 329
Query: 60 -MSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQ 118
M+EDL KFGRSRLERNDFSLN+ GM+NPASRQIYLTFPADSTF+EEDVSNYFSI+G VQ
Sbjct: 330 IMNEDLQKFGRSRLERNDFSLNNIGMMNPASRQIYLTFPADSTFKEEDVSNYFSIYGLVQ 389
Query: 119 DVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPD--RKQQQ 176
DVRIPYQQKRMFGFVTFVY ETVKLIL+KGNPHFVCDARVLVKPYKEKGKVPD RK QQ
Sbjct: 390 DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKHQQ 449
Query: 177 QVDRDFSPCGTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLM 236
DFSPCGTPTGLD R+ +D LGGRM+YNTQD+LWRR+ SRRLM
Sbjct: 450 MERGDFSPCGTPTGLDGRDPFD--LGGRMYYNTQDILWRRRLEEQADLQQALEAQSRRLM 507
Query: 237 GLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXXXXTV 296
LQLLDIKKQHQRA S+GSPIPSPTHSPNMFN N SFH
Sbjct: 508 SLQLLDIKKQHQRALSSGSPIPSPTHSPNMFNHNFPFSSFHSSSESQEENGSGSGSGSAS 567
Query: 297 CAS--VGQQ--IXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQECLEHNLPDSPFASPT 352
AS V QQ I DLQECLEHNLPDSPFASPT
Sbjct: 568 TASIPVDQQVNISVGKEAAVNGGENGNSDASGKQSSNHEESDLQECLEHNLPDSPFASPT 627
Query: 353 KAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGSFKSFNCQLPRFS 412
KA GD++A F+NGP E SDA SANSK T+TLL PS+S+LDMGSFKS+NCQ+PRFS
Sbjct: 628 KAIGDYMAAFNNGPNETNDSDA---SANSKFSTNTLL-PSSSSLDMGSFKSYNCQIPRFS 683
Query: 413 SGHGTIGMFAGTGGPIGI 430
SGHGTIGM AGTGGPIGI
Sbjct: 684 SGHGTIGMIAGTGGPIGI 701
>Medtr0005s0130.1 | RNA-binding domain CCCH-type zinc finger protein
| HC | scaffold0005:207720-204250 | 20130731
Length = 666
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/445 (63%), Positives = 299/445 (67%), Gaps = 21/445 (4%)
Query: 1 MMDQCH-ELLRSKSVQQQRLAAAT--SQLMASSTFPYSSKCMN--XXXXXXXXXXXXXXX 55
MMDQ H ELLRSKS QQR AAA SQLMAS++F S K MN
Sbjct: 228 MMDQYHHELLRSKSSHQQRFAAAAAASQLMASNSFLCSPKGMNFLLQQQQNQNDTQRAAA 287
Query: 56 XXXMMSEDLHKFGRSRLERNDFSLNSP-GMVNPASRQIYLTFPADSTFREEDVSNYFSIF 114
MM+E+LHKFGRSRLERNDFSL SP GM+NPASRQIYLTFPADSTFREEDVS YFS F
Sbjct: 288 AALMMNEELHKFGRSRLERNDFSLYSPTGMINPASRQIYLTFPADSTFREEDVSEYFSKF 347
Query: 115 GPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQ 174
GPVQDVRIPYQQKRMFGFVTFV+ ETVK ILSKGNPHFVC+ARVLVKPYKEKGK+PD+KQ
Sbjct: 348 GPVQDVRIPYQQKRMFGFVTFVFPETVKDILSKGNPHFVCEARVLVKPYKEKGKIPDKKQ 407
Query: 175 QQQVDRDFSPCGTPTGL-DAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSR 233
QQ DFSPC TPTGL DAR+QYDL L RMFYNT+DMLWRRK R
Sbjct: 408 LQQ-QGDFSPCRTPTGLVDARDQYDLQLAERMFYNTEDMLWRRKEQAELQQQALEIQR-R 465
Query: 234 RLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXXX 293
RLMGLQLLDIK QHQRA STGS + SPT SPNMF+QNLVLP
Sbjct: 466 RLMGLQLLDIKNQHQRALSTGSLVHSPTQSPNMFDQNLVLPFRRSSEFSDVIGSNSASAH 525
Query: 294 XTVCASVGQQ-----IXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQEC--LEHNLPDS 346
S GQQ +L EC LEHNLPDS
Sbjct: 526 SNASVSAGQQSVKGYAGKEVLVNGENGNSESNENGKTSSSHEEELNLHECLELEHNLPDS 585
Query: 347 PFASPTKAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGSFKSF-N 405
PFASPTKA GD V PFSNGP+E I SDAS + SK GTS LLP SAS LDMGSFK + N
Sbjct: 586 PFASPTKAVGDLVGPFSNGPLETIDSDASTS---SKFGTSKLLPTSAS-LDMGSFKPYNN 641
Query: 406 CQLPRFSSGHGTIGMFAGTGGPIGI 430
CQLPRFSS HGTIGMFAGTGGPIGI
Sbjct: 642 CQLPRFSSAHGTIGMFAGTGGPIGI 666
>Medtr4g043660.1 | RNA-binding domain CCCH-type zinc finger protein
| HC | chr4:14609657-14612948 | 20130731
Length = 666
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/445 (63%), Positives = 299/445 (67%), Gaps = 21/445 (4%)
Query: 1 MMDQCH-ELLRSKSVQQQRLAAAT--SQLMASSTFPYSSKCMN--XXXXXXXXXXXXXXX 55
MMDQ H ELLRSKS QQR AAA SQLMAS++F S K MN
Sbjct: 228 MMDQYHHELLRSKSSHQQRFAAAAAASQLMASNSFLCSPKGMNFLLQQQQNQNDTQRAAA 287
Query: 56 XXXMMSEDLHKFGRSRLERNDFSLNSP-GMVNPASRQIYLTFPADSTFREEDVSNYFSIF 114
MM+E+LHKFGRSRLERNDFSL SP GM+NPASRQIYLTFPADSTFREEDVS YFS F
Sbjct: 288 AALMMNEELHKFGRSRLERNDFSLYSPTGMINPASRQIYLTFPADSTFREEDVSEYFSKF 347
Query: 115 GPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQ 174
GPVQDVRIPYQQKRMFGFVTFV+ ETVK ILSKGNPHFVC+ARVLVKPYKEKGK+PD+KQ
Sbjct: 348 GPVQDVRIPYQQKRMFGFVTFVFPETVKDILSKGNPHFVCEARVLVKPYKEKGKIPDKKQ 407
Query: 175 QQQVDRDFSPCGTPTGL-DAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSR 233
QQ DFSPC TPTGL DAR+QYDL L RMFYNT+DMLWRRK R
Sbjct: 408 LQQ-QGDFSPCRTPTGLVDARDQYDLQLAERMFYNTEDMLWRRKEQAELQQQALEIQR-R 465
Query: 234 RLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXXX 293
RLMGLQLLDIK QHQRA STGS + SPT SPNMF+QNLVLP
Sbjct: 466 RLMGLQLLDIKNQHQRALSTGSLVHSPTQSPNMFDQNLVLPFRRSSEFSDVIGSNSASAH 525
Query: 294 XTVCASVGQQ-----IXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQEC--LEHNLPDS 346
S GQQ +L EC LEHNLPDS
Sbjct: 526 SNASVSAGQQSVKGYAGKEVLVNGENGNSESNENGKTSSSHEEELNLHECLELEHNLPDS 585
Query: 347 PFASPTKAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGSFKSF-N 405
PFASPTKA GD V PFSNGP+E I SDAS + SK GTS LLP SAS LDMGSFK + N
Sbjct: 586 PFASPTKAVGDLVGPFSNGPLETIDSDASTS---SKFGTSKLLPTSAS-LDMGSFKPYNN 641
Query: 406 CQLPRFSSGHGTIGMFAGTGGPIGI 430
CQLPRFSS HGTIGMFAGTGGPIGI
Sbjct: 642 CQLPRFSSAHGTIGMFAGTGGPIGI 666
>Medtr4g043660.2 | RNA-binding domain CCCH-type zinc finger protein
| HC | chr4:14609657-14612948 | 20130731
Length = 666
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/445 (63%), Positives = 299/445 (67%), Gaps = 21/445 (4%)
Query: 1 MMDQCH-ELLRSKSVQQQRLAAAT--SQLMASSTFPYSSKCMN--XXXXXXXXXXXXXXX 55
MMDQ H ELLRSKS QQR AAA SQLMAS++F S K MN
Sbjct: 228 MMDQYHHELLRSKSSHQQRFAAAAAASQLMASNSFLCSPKGMNFLLQQQQNQNDTQRAAA 287
Query: 56 XXXMMSEDLHKFGRSRLERNDFSLNSP-GMVNPASRQIYLTFPADSTFREEDVSNYFSIF 114
MM+E+LHKFGRSRLERNDFSL SP GM+NPASRQIYLTFPADSTFREEDVS YFS F
Sbjct: 288 AALMMNEELHKFGRSRLERNDFSLYSPTGMINPASRQIYLTFPADSTFREEDVSEYFSKF 347
Query: 115 GPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQ 174
GPVQDVRIPYQQKRMFGFVTFV+ ETVK ILSKGNPHFVC+ARVLVKPYKEKGK+PD+KQ
Sbjct: 348 GPVQDVRIPYQQKRMFGFVTFVFPETVKDILSKGNPHFVCEARVLVKPYKEKGKIPDKKQ 407
Query: 175 QQQVDRDFSPCGTPTGL-DAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSR 233
QQ DFSPC TPTGL DAR+QYDL L RMFYNT+DMLWRRK R
Sbjct: 408 LQQ-QGDFSPCRTPTGLVDARDQYDLQLAERMFYNTEDMLWRRKEQAELQQQALEIQR-R 465
Query: 234 RLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXXX 293
RLMGLQLLDIK QHQRA STGS + SPT SPNMF+QNLVLP
Sbjct: 466 RLMGLQLLDIKNQHQRALSTGSLVHSPTQSPNMFDQNLVLPFRRSSEFSDVIGSNSASAH 525
Query: 294 XTVCASVGQQ-----IXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQEC--LEHNLPDS 346
S GQQ +L EC LEHNLPDS
Sbjct: 526 SNASVSAGQQSVKGYAGKEVLVNGENGNSESNENGKTSSSHEEELNLHECLELEHNLPDS 585
Query: 347 PFASPTKAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGSFKSF-N 405
PFASPTKA GD V PFSNGP+E I SDAS + SK GTS LLP SAS LDMGSFK + N
Sbjct: 586 PFASPTKAVGDLVGPFSNGPLETIDSDASTS---SKFGTSKLLPTSAS-LDMGSFKPYNN 641
Query: 406 CQLPRFSSGHGTIGMFAGTGGPIGI 430
CQLPRFSS HGTIGMFAGTGGPIGI
Sbjct: 642 CQLPRFSSAHGTIGMFAGTGGPIGI 666
>Medtr5g008900.1 | zinc finger CCCH domain protein | HC |
chr5:1988974-1993972 | 20130731
Length = 685
Score = 261 bits (668), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 171/412 (41%), Positives = 219/412 (53%), Gaps = 18/412 (4%)
Query: 2 MDQCHELLRSKSVQQQRLAAATSQLMASSTFPYS-SKCMNXXXXXXXXXXXXXXXXXXMM 60
++Q E +R K+ QQ + A SQL A T P S K ++ M
Sbjct: 278 LEQHEEFMRFKAAQQHQRMVAASQLAAGGTSPVSYDKYIDLLMQQHSDNQRAVAAAAFAM 337
Query: 61 SEDLHKF-GRSRLERNDF-SLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQ 118
E+ GR R ERN+F ++ S N ASRQIYLTFPA+STF++EDVS YFS FGPVQ
Sbjct: 338 GEEYFNITGRGRPERNEFLAMVSGDKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQ 397
Query: 119 DVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK---QQ 175
DVRIPYQQKRMFGFVTFV+ ETV++ILSKGNPHF+CD+RVLVKPYKEKGKVPD++ QQ
Sbjct: 398 DVRIPYQQKRMFGFVTFVFPETVRVILSKGNPHFICDSRVLVKPYKEKGKVPDKRHQHQQ 457
Query: 176 QQVDR-DFSPCGTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXX-XXXXXXXSR 233
QQ +R DFSPC +P+ D++E +D + G RM YN D+L RRK R
Sbjct: 458 QQFERGDFSPCLSPSAFDSKEPFDFHPGTRMLYNPHDILLRRKIEEQAADFQQVLELQER 517
Query: 234 RLMGLQLLDIKK----QHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXX 289
RL LQL D K HQR+ S G+P+ P + N + P +
Sbjct: 518 RLKSLQLPDFKNNPIHHHQRSLSVGAPLVFPHQLHSHVNHAGLSPDNIQGDFTGYSGSLT 577
Query: 290 XXXXXTVCASVGQQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDL-QECLEHNLPDSPF 348
+ + DL + +EH LPDS F
Sbjct: 578 SAGSLGAASEQQELHKEADPSCIDAVTAAAESGNLKDVAKSEGVDLGKRNVEHTLPDSLF 637
Query: 349 ASPTKAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGS 400
ASPTKA GD+++ FS EA S A +T+ + K ++T SAS +M S
Sbjct: 638 ASPTKAAGDYLSDFSPQE-EANESTAFSTTLSQKFESTT----SASGDNMAS 684
>Medtr3g056160.1 | RNA-binding domain CCCH-type zinc finger protein
| LC | chr3:22346532-22343026 | 20130731
Length = 529
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 88 ASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSK 147
AS+QIYLTFPADSTF EEDVSNYF FG V+DVRIP QQ+RMFGFVTFV ETVK+IL K
Sbjct: 309 ASQQIYLTFPADSTFSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILDK 368
Query: 148 GNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCGTPTGLD 192
GNPH+V +RVLVKPYKEK K+ DRK +V+ C +P D
Sbjct: 369 GNPHYVRGSRVLVKPYKEKPKLIDRKYPYRVEHHV--CYSPRYAD 411
>Medtr3g056160.2 | RNA-binding domain CCCH-type zinc finger protein
| LC | chr3:22346532-22342932 | 20130731
Length = 529
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 88 ASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSK 147
AS+QIYLTFPADSTF EEDVSNYF FG V+DVRIP QQ+RMFGFVTFV ETVK+IL K
Sbjct: 309 ASQQIYLTFPADSTFSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILDK 368
Query: 148 GNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCGTPTGLD 192
GNPH+V +RVLVKPYKEK K+ DRK +V+ C +P D
Sbjct: 369 GNPHYVRGSRVLVKPYKEKPKLIDRKYPYRVEHHV--CYSPRYAD 411
>Medtr5g094700.1 | RNA-binding domain CCCH-type zinc finger protein
| LC | chr5:41381585-41375614 | 20130731
Length = 548
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 76/92 (82%)
Query: 88 ASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSK 147
ASRQIYLTFPADSTF EEDV+ YF+ FG V+DVRIP QQKRMFGFVTF ETV++IL K
Sbjct: 332 ASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDK 391
Query: 148 GNPHFVCDARVLVKPYKEKGKVPDRKQQQQVD 179
GNPH+V +RVLVKPY+EK KV +R+ +++
Sbjct: 392 GNPHYVRGSRVLVKPYREKTKVVERRYHDRME 423