Miyakogusa Predicted Gene

Lj3g3v3640180.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3640180.1 Non Characterized Hit- tr|K4BV79|K4BV79_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.3,6e-19,PEROXISOMAL BIOGENESIS FACTOR 11,Peroxisomal
biogenesis factor 11; seg,NULL; PEX11,Peroxisomal bioge,CUFF.46131.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family prote...   322   2e-88
Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protei...   116   2e-26
Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protei...    50   2e-06
Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protei...    50   2e-06
Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protei...    50   2e-06

>Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family protein
           | HC | scaffold0004:218301-217599 | 20130731
          Length = 212

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/235 (72%), Positives = 181/235 (77%), Gaps = 26/235 (11%)

Query: 1   MTDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVA---SGLS 57
           M DTVDKLVIFLAKRDGIDKL KTFQ               D+   F+  ++A   SGLS
Sbjct: 1   MNDTVDKLVIFLAKRDGIDKLEKTFQ--------------EDIPICFQACKLACGTSGLS 46

Query: 58  RKAFRTGRFLTGFNALRRNPGSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTIDANLA 117
           RKAFRTGRFLTGFNALRRNPGS  TLRLLAVLSN+GEMVYFFFDHFLWLSRIGT+DANLA
Sbjct: 47  RKAFRTGRFLTGFNALRRNPGSTLTLRLLAVLSNSGEMVYFFFDHFLWLSRIGTVDANLA 106

Query: 118 KKMSYISAFGEAVGYVFFIIADFILLQEGLKAXXXXXXXXXXXXXXXXXXXXXXXRIQKI 177
           KKMS+ISAFGEAVGYVFFIIADFILL EGLKA                        IQK+
Sbjct: 107 KKMSFISAFGEAVGYVFFIIADFILLNEGLKA---------EKKLRSSEGKDNEKEIQKL 157

Query: 178 RGDRIMRLMAVAANVADLIIALAEIEPNPFCCHTVSLGISGLVSAWAGWYRNWPS 232
           + DRIMRLMAVAANVADLIIALAEIEPNPFC HT+SLGISGLVSAWAGWYRNWPS
Sbjct: 158 KSDRIMRLMAVAANVADLIIALAEIEPNPFCNHTISLGISGLVSAWAGWYRNWPS 212


>Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protein |
           HC | chr1:6736189-6737364 | 20130731
          Length = 261

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 11  FLAKRDGIDKLVKTFQYVSKLV-NWHVEATNPDMSKRFKQWEVASGLSRKAFRTGRFLTG 69
           +LAKRDG+DKL+K  +Y +KL+   ++ A++P+++ R K +E + G+SRKAFR G+F+  
Sbjct: 37  YLAKRDGVDKLLKISRYTAKLILASNLSASDPNLTHRLKSFESSVGVSRKAFRLGKFVQD 96

Query: 70  FNALRRNPGSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTIDANLAKKMSYISAFGEA 129
            NALR     +    + + ++  GE  YFF + F+WLS+ G ID   +K  + ISA+ E 
Sbjct: 97  LNALRNTRVDSTRDLIFSFIAYGGEGFYFFIEQFVWLSKTGLIDPKRSKTFTKISAYAEF 156

Query: 130 VGYVFFIIADFILLQEGLKAXXXXXXXXXXXXXXXXXXXXXXXRIQKIRGDRIMRLMAVA 189
           +GY   I      L+  ++                        +++K+R   +M+ +++ 
Sbjct: 157 IGYFGSIALKTRDLKIIVEDEACLKSSIEINVLRGDGCGEEEIKLRKLREKILMKKLSIV 216

Query: 190 ANVADLIIALAEI-EPNPFCCHTVSLGISGLVSAWAGWYRNWPS 232
            ++AD ++AL +I +        + L  +GL+SA    ++NW S
Sbjct: 217 QDLADGLMALDDILDGKGLFSKPIVLSSAGLLSALISTHKNWVS 260


>Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28662000-28657039 | 20130731
          Length = 236

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 8   LVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVASGLSRKAFRTGRFL 67
           LV++L K +  DK+ +  QY SK ++        ++ K        + L+RK FR  +F+
Sbjct: 14  LVLYLNKAEARDKICRAIQYGSKFLSNGEPGKAQNVDK-------TTSLARKVFRLFKFV 66

Query: 68  TGFNAL-RRNP-GSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTID 113
              +AL   +P G+   L LL    NA    + F D F+WL R G ID
Sbjct: 67  NDLHALISPSPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVID 114


>Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28661674-28657111 | 20130731
          Length = 236

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 8   LVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVASGLSRKAFRTGRFL 67
           LV++L K +  DK+ +  QY SK ++        ++ K        + L+RK FR  +F+
Sbjct: 14  LVLYLNKAEARDKICRAIQYGSKFLSNGEPGKAQNVDK-------TTSLARKVFRLFKFV 66

Query: 68  TGFNAL-RRNP-GSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTID 113
              +AL   +P G+   L LL    NA    + F D F+WL R G ID
Sbjct: 67  NDLHALISPSPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVID 114


>Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28661672-28657111 | 20130731
          Length = 236

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 8   LVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVASGLSRKAFRTGRFL 67
           LV++L K +  DK+ +  QY SK ++        ++ K        + L+RK FR  +F+
Sbjct: 14  LVLYLNKAEARDKICRAIQYGSKFLSNGEPGKAQNVDK-------TTSLARKVFRLFKFV 66

Query: 68  TGFNAL-RRNP-GSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTID 113
              +AL   +P G+   L LL    NA    + F D F+WL R G ID
Sbjct: 67  NDLHALISPSPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVID 114