Miyakogusa Predicted Gene

Lj3g3v3639960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639960.2 tr|Q93V67|Q93V67_9BRYO PpSIG1 OS=Physcomitrella
patens GN=Sig1 PE=2 SV=1,31.18,0.0000000000003,no description,NULL;
Sigma2 domain of RNA polymerase sigma factors,RNA polymerase sigma
factor, regi,CUFF.46126.2
         (300 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01...   387   e-107
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01...   387   e-107
Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778...    54   2e-07

>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
           scaffold0172:25315-21123 | 20130731
          Length = 504

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/298 (69%), Positives = 239/298 (80%), Gaps = 7/298 (2%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                DIIEK S + DFGST YQ+ P+KSV VAKKSS YT  
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHACDFGSTQYQLPPSKSVIVAKKSSKYTPT 60

Query: 61  FPASDRPNQSIKALKEHV-DGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSML 119
           FP  +R NQSIKALKEHV D   A +E WFQ  +SND EVESSD+ YS+++LLLLQKSML
Sbjct: 61  FPP-ERKNQSIKALKEHVVDSAQADSEQWFQGYNSNDFEVESSDMDYSLDSLLLLQKSML 119

Query: 120 EKQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAM 179
           EKQWSLS ER+VL+E+ R+EK  +KV+VTCSGVSARQRR+ TKRK+  K+GSA+     M
Sbjct: 120 EKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTTKRKVAAKSGSAV-----M 174

Query: 180 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 239
           Q+RS ISPEL+QNR KGYVKGVV ++LLSHAEVVKLSEKIK GLSLDEHKSRLKE+LG E
Sbjct: 175 QLRSTISPELIQNRLKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSE 234

Query: 240 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           PSDDQ+A SLKISR++LRAK IEC+LARE+L MSNVRLV+SIAQRYDNMGAEM DLVQ
Sbjct: 235 PSDDQVATSLKISRADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQ 292


>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
           scaffold0172:25892-20750 | 20130731
          Length = 504

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/298 (69%), Positives = 239/298 (80%), Gaps = 7/298 (2%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                DIIEK S + DFGST YQ+ P+KSV VAKKSS YT  
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHACDFGSTQYQLPPSKSVIVAKKSSKYTPT 60

Query: 61  FPASDRPNQSIKALKEHV-DGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSML 119
           FP  +R NQSIKALKEHV D   A +E WFQ  +SND EVESSD+ YS+++LLLLQKSML
Sbjct: 61  FPP-ERKNQSIKALKEHVVDSAQADSEQWFQGYNSNDFEVESSDMDYSLDSLLLLQKSML 119

Query: 120 EKQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAM 179
           EKQWSLS ER+VL+E+ R+EK  +KV+VTCSGVSARQRR+ TKRK+  K+GSA+     M
Sbjct: 120 EKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTTKRKVAAKSGSAV-----M 174

Query: 180 QMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCE 239
           Q+RS ISPEL+QNR KGYVKGVV ++LLSHAEVVKLSEKIK GLSLDEHKSRLKE+LG E
Sbjct: 175 QLRSTISPELIQNRLKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSE 234

Query: 240 PSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           PSDDQ+A SLKISR++LRAK IEC+LARE+L MSNVRLV+SIAQRYDNMGAEM DLVQ
Sbjct: 235 PSDDQVATSLKISRADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQ 292


>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
           chr3:55377817-55374030 | 20130731
          Length = 572

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query: 210 AEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARER 269
           +E +K SE I+  + L++ +  L EK G +P+  Q A    + +  LR +       +E+
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337

Query: 270 LAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           +  SN+RLV+S+A+ Y   G  + DLVQ
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQ 365